Phage f1 IX:On One Page

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References Suggestions
Standard Name

IX

Gene Synonym(s)

gene IX [1]

Product Desc.
Product Synonyms(s)

IX, protein IX [2], unnamed protein product [1], protein C [3], Coat protein C [4], polypeptide II [4], G9P [4]

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links



        

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Notes

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References

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  1. ↑ 1.0 1.1 NCBI: Genome of bacteriophage f1 (closely related to phages fd and m13) http://www.ncbi.nlm.nih.gov/nuccore/V00606.1
  2. ↑ NCBI: Bacteriophage f1, complete genome http://www.ncbi.nlm.nih.gov/nuccore/J02448
  3. ↑ Lin, TC et al. (1980) Isolation and characterization of the C and D proteins coded by gene IX and gene VI in the filamentous bacteriophage fl and fd. J. Biol. Chem. 255 10331-7 PubMed
  4. ↑ 4.0 4.1 4.2 UniProt:P69537 (G9P_BPF1) http://www.uniprot.org/uniprot/P69537

Gene

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

IX

Mnemonic
Synonyms

gene IX [1]

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Notes

Location(s) and DNA Sequence

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Strain Map location Genome coordinates Genome browsers Sequence links

J02448: 1010..1500
<gbrowseImage> name=J02448:1010..1500 source=bacteriophage_f1 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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Resource Resource Type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes
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Notes

Links

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Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Tail virion protein G9P [2]

Synonyms

IX, protein IX [3], unnamed protein product [1], protein C [4], Coat protein C [2], polypeptide II [2], G9P [2]

Product description
EC number (for enzymes)


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Notes

Function

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Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0044425

membrane part

PMID:2746731[5]

NAS: Non-traceable Author Statement

C

complete

GO:0005887

integral to plasma membrane

PMID:7616570[6]

IDA: Inferred from Direct Assay

C

complete

GO:0019028

viral capsid

PMID:7000776[4]

IDA: Inferred from Direct Assay

C

complete

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Interactions

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Partner Type Partner Notes References Evidence

DNA

Packing signal (PS) on phage DNA

Recognises PS to encapsidate phage DNA

PMID:2746731[5]

IMP; Gene mutations promoted assembly of ss plasmid DNAs that lacked a PS into filamentous transducing particles, suggesting that the wild-type proteins may normally interact with the PS.

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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MSVLVYSFAS FVLGWCLRSG ITYFTRLMET SS
Length

32

Mol. Wt

3.652 kDa

pI

8.1 (calculated)

Extinction coefficient

8,480 - 8,605 (calc based on 2 Y, 1 W, and 1 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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<motif_map/>

Structure

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Structures

<beststructure> gene=Phage_f1_IX taxon=10863 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources


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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links



References


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 NCBI: Genome of bacteriophage f1 (closely related to phages fd and m13) http://www.ncbi.nlm.nih.gov/nuccore/V00606.1
  2. ↑ 2.0 2.1 2.2 2.3 UniProt:P69537 (G9P_BPF1) http://www.uniprot.org/uniprot/P69537
  3. ↑ NCBI: Bacteriophage f1, complete genome http://www.ncbi.nlm.nih.gov/nuccore/J02448
  4. ↑ 4.0 4.1 Lin, TC et al. (1980) Isolation and characterization of the C and D proteins coded by gene IX and gene VI in the filamentous bacteriophage fl and fd. J. Biol. Chem. 255 10331-7 PubMed
  5. ↑ 5.0 5.1 Russel, M & Model, P (1989) Genetic analysis of the filamentous bacteriophage packaging signal and of the proteins that interact with it. J. Virol. 63 3284-95 PubMed
  6. ↑ Endemann, H & Model, P (1995) Location of filamentous phage minor coat proteins in phage and in infected cells. J. Mol. Biol. 250 496-506 PubMed

Categories


Expression


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Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

Intracellular Levels


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Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
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Notes

Transcription and Transcriptional Regulation


<protect>

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Transcription unit(s)
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|} </protect>

Notes

Translation and Regulation of Translation


<gbrowseImage> name=J02448:1186..1226 source=bacteriophage_f1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

Turnover and Regulation of Turnover

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Notes

Experimental


Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies

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Type Reference Notes
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Expression Resources

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Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to Phage_f1_IX Expression


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Database Accession Notes
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Notes

Links



References


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Categories


Evolution


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Homologs Families Links References Suggestions

Homologs in Other Organisms


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Organism Homologs (Statistics) Comments
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Do-It-Yourself Web Tools


Notes

Families


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Database Accession Notes
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Notes

Links



References


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Categories


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