Phage f1 IX:On One Page

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Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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References Suggestions

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Standard Name

IX

Gene Synonym(s)

gene IX [1]

Product Desc.
Product Synonyms(s)

IX, protein IX [2], unnamed protein product [1], protein C [3], Coat protein C [4], polypeptide II [4], G9P [4]

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links

porteco.png

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 NCBI: Genome of bacteriophage f1 (closely related to phages fd and m13) http://www.ncbi.nlm.nih.gov/nuccore/V00606.1
  2. ↑ NCBI: Bacteriophage f1, complete genome http://www.ncbi.nlm.nih.gov/nuccore/J02448
  3. ↑ Lin, TC et al. (1980) Isolation and characterization of the C and D proteins coded by gene IX and gene VI in the filamentous bacteriophage fl and fd. J. Biol. Chem. 255 10331-7 PubMed
  4. ↑ 4.0 4.1 4.2 UniProt:P69537 (G9P_BPF1) http://www.uniprot.org/uniprot/P69537 Cite error: Invalid <ref> tag; name "uniprot:P69537" defined multiple times with different content Cite error: Invalid <ref> tag; name "uniprot:P69537" defined multiple times with different content

Gene

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

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Nomenclature

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Standard name

IX

Mnemonic
Synonyms

gene IX [1]

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Notes

Location(s) and DNA Sequence

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<protect> <protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

J02448: 1010..1500
<gbrowseImage> name=J02448:1010..1500 source=bacteriophage_f1 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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<protect> See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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<protect> See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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Resource Resource Type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Tail virion protein G9P [2]

Synonyms

IX, protein IX [3], unnamed protein product [1], protein C [4], Coat protein C [2], polypeptide II [2], G9P [2]

Product description
EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0044425

membrane part

PMID:2746731

NAS: Non-traceable Author Statement

C

complete

GO:0005887

integral to plasma membrane

PMID:7616570

IDA: Inferred from Direct Assay

C

complete

GO:0019028

viral capsid

PMID:7000776

IDA: Inferred from Direct Assay

C

complete

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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

DNA

Packing signal (PS) on phage DNA

Recognises PS to encapsidate phage DNA

PMID:2746731

IMP; Gene mutations promoted assembly of ss plasmid DNAs that lacked a PS into filamentous transducing particles, suggesting that the wild-type proteins may normally interact with the PS.

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Notes

Localization

<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MSVLVYSFAS FVLGWCLRSG ITYFTRLMET SS
Length

32

Mol. Wt

3.652 kDa

pI

8.1 (calculated)

Extinction coefficient

8,480 - 8,605 (calc based on 2 Y, 1 W, and 1 C residues)

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Domains/Motifs/Modification Sites

<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure <protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_f1_IX taxon=10863 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 NCBI: Genome of bacteriophage f1 (closely related to phages fd and m13) http://www.ncbi.nlm.nih.gov/nuccore/V00606.1
  2. ↑ 2.0 2.1 2.2 2.3 UniProt:P69537 (G9P_BPF1) http://www.uniprot.org/uniprot/P69537 Cite error: Invalid <ref> tag; name "uniprot:P69537" defined multiple times with different content Cite error: Invalid <ref> tag; name "uniprot:P69537" defined multiple times with different content
  3. ↑ NCBI: Bacteriophage f1, complete genome http://www.ncbi.nlm.nih.gov/nuccore/J02448
  4. ↑ Lin, TC et al. (1980) Isolation and characterization of the C and D proteins coded by gene IX and gene VI in the filamentous bacteriophage fl and fd. J. Biol. Chem. 255 10331-7 PubMed

Categories

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Expression

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Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

Intracellular Levels

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Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
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Notes

Translation and Regulation of Translation

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<gbrowseImage> name=J02448:1186..1226 source=bacteriophage_f1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

Turnover and Regulation of Turnover

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Notes

Experimental

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<protect> Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes
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Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to Phage_f1_IX Expression

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Database Accession Notes
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Notes

Links

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References

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Evolution

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Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments
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Do-It-Yourself Web Tools

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Notes

Families

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Database Accession Notes
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Notes

Links

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References

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Categories

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