Phage f1 IV:On One Page

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Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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References Suggestions

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Standard Name

IV

Gene Synonym(s)

gene IV [1]

Product Desc.

secretin, forms conductive channels in outer membrane [2]

Product Synonyms(s)

IV, protein IV [3], Gene 4 protein [4], G4P [4]

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links

porteco.png

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ NCBI: Genome of bacteriophage f1 (closely related to phages fd and m13) http://www.ncbi.nlm.nih.gov/nuccore/V00606.1
  2. ↑ Marciano, DK et al. (2001) Assembling filamentous phage occlude pIV channels. Proc. Natl. Acad. Sci. U.S.A. 98 9359-64 PubMed
  3. ↑ NCBI: Bacteriophage f1, complete genome http://www.ncbi.nlm.nih.gov/nuccore/J02448
  4. ↑ 4.0 4.1 UniProt:P03666 (G4P_BPF1) http://www.uniprot.org/uniprot/P03666 Cite error: Invalid <ref> tag; name "uniprot:P03666" defined multiple times with different content

Gene

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

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Nomenclature

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<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

IV

Mnemonic
Synonyms

gene IV [1]

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Notes

Location(s) and DNA Sequence

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<protect> <protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

J02448: 1660..8060
<gbrowseImage> name=J02448:1660..8060 source=bacteriophage_f1 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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<protect> See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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<protect> See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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<protect> See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Viron export protein [2]

Synonyms

IV, protein IV [3], Gene 4 protein [2], G4P [2]

Product description

secretin, forms conductive channels in outer membrane [4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0045203

integral to cell outer membrane

PMID:2407858

IDA: Inferred from Direct Assay

C

complete

GO:0022832

voltage-gated channel activity

PMID:10348737

IMP: Inferred from Mutant Phenotype

F

complete

GO:0046753

non-lytic viral release

PMID:10348737

IC: Inferred by Curator

GO:0022832


P

complete

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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MKLLNVINFV FLMFVSSSSF AQVIEMNNSP LRDFVTWYSK QTGESVIVSP DVKGTVTVYS
SDVKPENLRN FFISVLRANN FDMVGSNPSI IQKYNPNNQD YIDELPSSDN QEYDDNSAPS
GGFFVPQNDN VTQTFKINNV RAKDLIRVVE LFVKSNTSKS SNVLSIDGSN LLVVSAPKDI
LDNLPQFLST VDLPTDQILI EGLIFEVQQG DALDFSFAAG SQRGTVAGGV NTDRLTSVLS
SAGGSFGIFN GDVLGLSVRA LKTNSHSKIL SVPRILTLSG QKGSISVGQN VPFITGRVTG
ESANVNNPFQ TIERQNVGIS MSVFPVAMAG GNIVLDITSK ADSLSSSTQA SDVITNQRSI
ATTVNLRDGQ TLLLGGLTDY KNTSQDSGVP FLSKIPLIGL LFSSRSDSNE ESTLYVLVKA
TIVRAL
Length

426

Mol. Wt

45.879 kDa

pI

4.8 (calculated)

Extinction coefficient

15,930 (calc based on 7 Y, 1 W, and 0 C residues)

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Domains/Motifs/Modification Sites

<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Motif

1-21

Sec transport signal sequence

cleaved upon transport through Sec system into periplasm


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<motif_map/>

Structure <protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_f1_IV taxon=10863 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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<protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ NCBI: Genome of bacteriophage f1 (closely related to phages fd and m13) http://www.ncbi.nlm.nih.gov/nuccore/V00606.1
  2. ↑ 2.0 2.1 2.2 UniProt:P03666 (G4P_BPF1) http://www.uniprot.org/uniprot/P03666 Cite error: Invalid <ref> tag; name "uniprot:P03666" defined multiple times with different content
  3. ↑ NCBI: Bacteriophage f1, complete genome http://www.ncbi.nlm.nih.gov/nuccore/J02448
  4. ↑ Marciano, DK et al. (2001) Assembling filamentous phage occlude pIV channels. Proc. Natl. Acad. Sci. U.S.A. 98 9359-64 PubMed

Categories

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Expression

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Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

Intracellular Levels

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<protect> See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
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Notes

Translation and Regulation of Translation

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<gbrowseImage> name=J02448:4200..4240 source=bacteriophage_f1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

Turnover and Regulation of Turnover

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Notes

Experimental

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<protect> Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes
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Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to Phage_f1_IV Expression

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Database Accession Notes
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Notes

Links

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References

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Categories

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Evolution

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Homologs Families Links References Suggestions

Homologs in Other Organisms

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<protect> See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments
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Do-It-Yourself Web Tools

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Notes

Families

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<protect> See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes
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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

Categories

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