Phage f1 IV:On One Page

From EcoliWiki
Jump to navigation Jump to search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

IV

Gene Synonym(s)

gene IV [1]

Product Desc.

secretin, forms conductive channels in outer membrane [2]

Product Synonyms(s)

IV, protein IV [3], Gene 4 protein [4], G4P [4]

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links



        

edit table


Notes

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ NCBI: Genome of bacteriophage f1 (closely related to phages fd and m13) http://www.ncbi.nlm.nih.gov/nuccore/V00606.1
  2. ↑ Marciano, DK et al. (2001) Assembling filamentous phage occlude pIV channels. Proc. Natl. Acad. Sci. U.S.A. 98 9359-64 PubMed
  3. ↑ NCBI: Bacteriophage f1, complete genome http://www.ncbi.nlm.nih.gov/nuccore/J02448
  4. ↑ 4.0 4.1 UniProt:P03666 (G4P_BPF1) http://www.uniprot.org/uniprot/P03666

Gene

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

IV

Mnemonic
Synonyms

gene IV [1]

edit table

</protect>

Notes

Location(s) and DNA Sequence

[back to top]


<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

J02448: 1660..8060
<gbrowseImage> name=J02448:1660..8060 source=bacteriophage_f1 preset=GeneLocation </gbrowseImage>

edit table

</protect>

Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
edit table


Notes

Genetic Interactions

[back to top]



Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table


Notes

Links

[back to top]



Product(s)

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Viron export protein [2]

Synonyms

IV, protein IV [3], Gene 4 protein [2], G4P [2]

Product description

secretin, forms conductive channels in outer membrane [4]

EC number (for enzymes)


edit table


Notes

Function

[back to top]


Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0045203

integral to cell outer membrane

PMID:2407858[5]

IDA: Inferred from Direct Assay

C

complete

GO:0022832

voltage-gated channel activity

PMID:10348737[6]

IMP: Inferred from Mutant Phenotype

F

complete

GO:0046753

non-lytic viral release

PMID:10348737[6]

IC: Inferred by Curator

GO:0022832


P

complete

edit table


Interactions

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MKLLNVINFV FLMFVSSSSF AQVIEMNNSP LRDFVTWYSK QTGESVIVSP DVKGTVTVYS
SDVKPENLRN FFISVLRANN FDMVGSNPSI IQKYNPNNQD YIDELPSSDN QEYDDNSAPS
GGFFVPQNDN VTQTFKINNV RAKDLIRVVE LFVKSNTSKS SNVLSIDGSN LLVVSAPKDI
LDNLPQFLST VDLPTDQILI EGLIFEVQQG DALDFSFAAG SQRGTVAGGV NTDRLTSVLS
SAGGSFGIFN GDVLGLSVRA LKTNSHSKIL SVPRILTLSG QKGSISVGQN VPFITGRVTG
ESANVNNPFQ TIERQNVGIS MSVFPVAMAG GNIVLDITSK ADSLSSSTQA SDVITNQRSI
ATTVNLRDGQ TLLLGGLTDY KNTSQDSGVP FLSKIPLIGL LFSSRSDSNE ESTLYVLVKA
TIVRAL
Length

426

Mol. Wt

45.879 kDa

pI

4.8 (calculated)

Extinction coefficient

15,930 (calc based on 7 Y, 1 W, and 0 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Motif

1-21

Sec transport signal sequence

cleaved upon transport through Sec system into periplasm


edit table

<motif_map/>

Structure

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_f1_IV taxon=10863 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

Notes

Gene Product Resources


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table


Notes

Links



References


See Help:References for how to manage references in EcoliWiki.

  1. ↑ NCBI: Genome of bacteriophage f1 (closely related to phages fd and m13) http://www.ncbi.nlm.nih.gov/nuccore/V00606.1
  2. ↑ 2.0 2.1 2.2 UniProt:P03666 (G4P_BPF1) http://www.uniprot.org/uniprot/P03666
  3. ↑ NCBI: Bacteriophage f1, complete genome http://www.ncbi.nlm.nih.gov/nuccore/J02448
  4. ↑ Marciano, DK et al. (2001) Assembling filamentous phage occlude pIV channels. Proc. Natl. Acad. Sci. U.S.A. 98 9359-64 PubMed
  5. ↑ Brissette, JL & Russel, M (1990) Secretion and membrane integration of a filamentous phage-encoded morphogenetic protein. J. Mol. Biol. 211 565-80 PubMed
  6. ↑ 6.0 6.1 Marciano, DK et al. (1999) An aqueous channel for filamentous phage export. Science 284 1516-9 PubMed

Categories


Expression


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

Intracellular Levels


See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
edit table


Notes

Transcription and Transcriptional Regulation


<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
edit table

|} </protect>

Notes

Translation and Regulation of Translation


<gbrowseImage> name=J02448:4200..4240 source=bacteriophage_f1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

Turnover and Regulation of Turnover

</protect>

Notes

Experimental


Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
edit table


Expression Studies

See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes
edit table


Expression Resources

See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
edit table


Notes

Accessions Related to Phage_f1_IV Expression


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table


Notes

Links



References


See Help:References for how to manage references in EcoliWiki.


Categories


Evolution


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments
edit table


Do-It-Yourself Web Tools


Notes

Families


See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes
edit table


Notes

Links



References


See Help:References for how to manage references in EcoliWiki.

Categories


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=Phage_f1_IV:On_One_Page&oldid=928544"