Phage T5 108:On One Page
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Quickview | | Gene | | Product(s) | | Expression| | Evolution | | References | |
Quickview
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
<protect>
| Standard Name |
108 |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
identified by match to InterPro domains IPR001005 and IPR001410 |
| Product Synonyms(s) | |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
</protect> <protect></protect>
Notes
References
See Help:References for how to manage references in EcoliWiki.
Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
<protect>
Nomenclature
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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
108 |
|---|---|
| Mnemonic | |
| Synonyms |
|
| edit table |
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Notes
Location(s) and DNA Sequence
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<protect>
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
NC_005859: 53973..67903 |
||||
| edit table |
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Notes
Sequence Features
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
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Notes
Alleles and Phenotypes
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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Resources
<protect>
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Accessions in Other Databases
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
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Notes
Links
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| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
Categories
Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
putative replication origin binding protein |
|---|---|
| Synonyms | |
| Product description |
identified by match to InterPro domains IPR001005 and IPR001410 |
| EC number (for enzymes) |
|
| edit table |
</protect> <protect></protect>
Notes
Function
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Gene Ontology
<protect>
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| edit table |
</protect>
Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
</protect> </protect>
Notes
Localization
<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Structure and Physical Properties
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Physical Properties
<protect>
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MFSILQGHAG FSRDLATGIW REIKAEDYTF AKRFSKEHPE GKPASMPFKF DVIEEHDPQS LAEMLPLMRR LTSDPHIVAV RGRCLAPKNN VRRKKGNFNV SNPSNIIAMD VDGILDTGGY DKFNLVGMAR HIIKMLNSIS EDMFPLDAGF IAHASSSAGL KPGIRMHLML ESNVKVTQGQ LKFLFTSIND SSKQKFGFDI ADLAYYSSVQ LHYFADPLFS DGIVDPFKAE SKPRLVYVKG SKVNLPNNLV DYETTRGEFK EEFYSLLDQI KGKKIASDKV EETISELEEA DDGVYLRIIP KLYHRALEDG VDFAWLEREI KPALSEYIAT KDNSRNIQDY FNNGRKQALK AFVNNSKREI PLNLKGVPLK KLEVDSPPEV PYLKINIVPP KGHITFVKAS LGTGKTTAVT KWLDAGVLPG NFLAVTNTRA LVSSNAKKFS AGQYDKSVDM LNFKRGAIDR MSTTIHSLHK FKSFIGQIDT IFIDECDAVM NDLLFAPVVK QRRECIQVLR DILMTAKTVI LSDGDISAET IEAYGSLIDF DKPVAFYNHH RKMLSKAHAY EFPDESSIWV ALQTSLEMGE KSILVSDCGP DELNEKGMAL RRNTGALVKE IHSNSTSDVD IRRILDYTTN ELIDQQIDCL LCSPSVTSGV DFNYFDNVFV ITRTSNQAPN MRFQAIRRDR GAQNIYYFID KSTSGFSAGS EQYNIDEGWL ELAQQLYARR RELESRNYTS TLRYYLLDQG ATIDIFSESW GTIEGAGKEY TEERIKAILH STPDYCAPRH ADAYEAKLLL VRYYHLESIK DVTVEHVEQY IKDKPNDRAA FFHKMHEMFW EDIKKCSNVT IKPFIEALKG KKKDFFLKTG QSANPKYARM YLGMMGIGKD MNTENIVDWY RTYCKIECMP IPFKFMTEEE RAMAEEVMSE LGATNEDA |
| Length |
928 |
| Mol. Wt |
105.354 kDa |
| pI |
6.6 (calculated) |
| Extinction coefficient |
97,640 - 98,890 (calc based on 36 Y, 8 W, and 10 C residues) |
| edit table |
</protect>
Domains/Motifs/Modification Sites
|
<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
</protect> |
<motif_map/> |
|
Structure
</protect> | </protect>
Structure figures<protect> | ||||||
Notes
Gene Product Resources
<protect>
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Accessions in Other Databases
<protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
<protect>
| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
Expression
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Overview | Transcription | Translation | Turnover | Experimental | Links | References | Suggestions |
Overview
Cellular Levels
<protect>
See Help:Cellular levels
| Molecule | Organism or Strain | Value | Units | Experimental Conditions | Assay used | Notes | Reference(s) |
|---|---|---|---|---|---|---|---|
| edit table |
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Notes
Transcription and Transcriptional Regulation
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| <protect>
See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.
</protect> |
</protect>
Notes
Translation and Regulation of Translation
<protect><gbrowseImage>
name=NC_005859:59525..59565
source= bacteriophage_T5
type=Gene+DNA_+Protein
preset=Nterminus
</gbrowseImage>
This picture shows the sequence around the N-terminus.
</protect>
Notes
Turnover and Regulation of Turnover
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Notes
Experimental
<protect>
Mutations Affecting Expression
<protect>
See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.
| Allele Name | Mutation | Phenotype | Reference |
|---|---|---|---|
| edit table |
</protect>
Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.
| Type | Reference | Notes |
|---|---|---|
| edit table |
</protect>
Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.
| Resource Name | Resource Type | Description | Source | Notes |
|---|---|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Accessions Related to Phage_T5_108 Expression
<protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
<protect>
| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
Evolution
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Homologs | Families | Links | References | Suggestions |
Homologs in Other Organisms
<protect>
See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.
| Organism | Homologs (Statistics) | Comments |
|---|---|---|
| edit table |
</protect>
Do-It-Yourself Web Tools
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Notes
Families
<protect>
See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
<protect>
| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
