Phage T4 54:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

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Standard Name

54

Gene Synonym(s)
Product Desc.
Product Synonyms(s)
Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links

porteco.png

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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References

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Gene

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

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Nomenclature

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<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

54

Mnemonic
Synonyms


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Notes

Location(s) and DNA Sequence

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<protect> <protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

NC_000866: 119829..124639
<gbrowseImage> name=NC_000866:119829..124639 source= bacteriophage_T4 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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<protect> See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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<protect> See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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Resource Resource Type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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References

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Categories

Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

gp54 baseplate tail tube initiator

Synonyms
Product description
EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0098003

virus tail assembly

PMID:4580679

IGI: Inferred from Genetic Interaction

EcoliWiki:Phage_T4_23


P

Tails were isolated from capsid (gene 23) mutants of T4.

complete

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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MYSLEEFNNQ AINADFQRNN MFSCVFATTP STKSSSLISS ISNFSYNNLG LNSDWLGLTQ
GDINQGITTL ITAGTQKLIR KSGVSKYLIG AMSQRTVQSL LGSFTVGTYL IDFFNMAYNS
SGLMIYSVKM PENRLSYETD WNYNSPNIRI TGRELDPLVI SFRMDSEACN YRAMQDWVNS
VQDPVTGLRA LPQDVEADIQ VNLHSRNGLP HTAVMFTMHS ISVSAPELSY DGDNQITTFD
VTFAYRVMQA GAVDRQRALE WLESAAINGI QSVLGNSGGV TGLSNSLSRL SRLGGTAGSI
SNINTMTGIV NSQSKILGAI
Length

320

Mol. Wt

34.977 kDa

pI

5.4 (calculated)

Extinction coefficient

38,390 - 38,640 (calc based on 11 Y, 4 W, and 2 C residues)

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Domains/Motifs/Modification Sites

<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
<protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_T4_54 taxon=10665 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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<protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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References

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Categories

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Expression

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Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

Cellular Levels

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Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
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Notes

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000866:121733..121773 source= bacteriophage_T4 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

Turnover and Regulation of Turnover

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Notes

Experimental

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<protect> Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes
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Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to Phage_T4_54 Expression

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Database Accession Notes
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Notes

Links

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References

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Categories

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Evolution

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Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments
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Do-It-Yourself Web Tools

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Notes

Families

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Database Accession Notes
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Notes

Links

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References

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Categories

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