Phage T4 34:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

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Standard Name

34

Gene Synonym(s)
Product Desc.
Product Synonyms(s)
Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links

porteco.png

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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References

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Gene

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

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Nomenclature

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<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

34

Mnemonic
Synonyms


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Notes

Location(s) and DNA Sequence

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<protect> <protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

NC_000866: 143071..162416
<gbrowseImage> name=NC_000866:143071..162416 source= bacteriophage_T4 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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<protect> See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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<protect> See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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<protect> See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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References

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Categories

Product(s)

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

gp34 long tail fiber, proximal subunit

Synonyms
Product description
EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MAEIKREFRA EDGLDAGGDK IINVALADRT VGTDGVNVDY LIQENTVQQY DPTRGYLKDF
VIIYDNRFWA AINDIPKPAG AFNSGRWRAL RTDANWITVS SGSYQLKSGE AISVNTAAGN
DITFTLPSSP IDGDTIVLQD IGGKPGVNQV LIVAPVQSIV NFRGEQVRSV LMTHPKSQLV
LIFSNRLWQM YVADYSREAI VVTPANTYQA QSNDFIVRRF TSAAPINVKL PRFANHGDII
NFVDLDKLNP LYHTIVTTYD ETTSVQEVGT HSIEGRTSID GFLMFDDNEK LWRLFDGDSK
ARLRIITTNS NIRPNEEVMV FGANNGTTQT IELKLPTNIS VGDTVKISMN YMRKGQTVKI
KAADEDKIAS SVQLLQFPKR SEYPPEAEWV TVQELVFNDE TNYVPVLELA YIEDSDGKYW
VVQQNVPTVE RVDSLNDSTR ARLGVIALAT QAQANVDLEN SPQKELAITP ETLANRTATE
TRRGIARIAT TAQVNQNTTF SFADDIIITP KKLNERTATE TRRGVAEIAT QQETNAGTDD
TTIITPKKLQ ARQGSESLSG IVTFVSTAGA TPASSRELNG TNVYNKNTDN LVVSPKALDQ
YKATPTQQGA VILAVESEVI AGQSQQGWAN AVVTPETLHK KTSTDGRIGL IEIATQSEVN
TGTDYTRAVT PKTLNDRRAT ESLSGIAEIA TQVEFDAGVD DTRISTPLKI KTRFNSTDRT
SVVALSGLVE SGTLWDHYTL NILEANETQR GTLRVATQVE AAAGTLDNVL ITPKKLLGTK
STEAQEGVIK VATQSETVTG TSANTAVSPK NLKWIAQSEP TWAATTAIRG FVKTSSGSIT
FVGNDTVGST QDLELYEKNS YAVSPYELNR VLANYLPLKA KAADTNLLDG LDSSQFIRRD
IAQTVNGSLT LTQQTNLSAP LVSSSTGEFG GSLAANRTFT IRNTGAPTSI VFEKGPASGA
NPAQSMSIRV WGNQFGGGSD TTRSTVFEVG DDTSHHFYSQ RNKDGNIAFN INGTVMPINI
NASGLMNVNG TATFGRSVTA NGEFISKSAN AFRAINGDYG FFIRNDASNT YFLLTAAGDQ
TGGFNGLRPL LINNQSGQIT IGEGLIIAKG VTINSGGLTV NSRIRSQGTK TSDLYTRAPT
SDTVGFWSID INDSATYNQF PGYFKMVEKT NEVTGLPYLE RGEEVKSPGT LTQFGNTLDS
LYQDWITYPT TPEARTTRWT RTWQKTKNSW SSFVQVFDGG NPPQPSDIGA LPSDNATMGN
LTIRDFLRIG NVRIVPDPVN KTVKFEWVE
Length

1,289

Mol. Wt

140.405 kDa

pI

5.2 (calculated)

Extinction coefficient

146,680 (calc based on 32 Y, 18 W, and 0 C residues)

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Domains/Motifs/Modification Sites

<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
<protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_T4_34 taxon=10665 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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<protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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References

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Categories

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Expression

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Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

Cellular Levels

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<protect> See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
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Notes

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000866:150789..150829 source= bacteriophage_T4 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

Turnover and Regulation of Turnover

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Notes

Experimental

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<protect> Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes
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Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to Phage_T4_34 Expression

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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References

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Categories

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Evolution

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Homologs Families Links References Suggestions

Homologs in Other Organisms

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<protect> See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments
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Do-It-Yourself Web Tools

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Notes

Families

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<protect> See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes
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Notes

Links

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References

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Categories

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