Phage T4 20:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

20

Gene Synonym(s)
Product Desc.

head initiation complex; connects head to neck

Product Synonyms(s)
Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links



        

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Notes

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References

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Gene

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

20

Mnemonic
Synonyms


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</protect>

Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

NC_000866: 98059..105929
<gbrowseImage> name=NC_000866:98059..105929 source= bacteriophage_T4 preset=GeneLocation </gbrowseImage>

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</protect>

Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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Resource Resource Type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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References

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Categories

Product(s)

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

gp20 portal vertex protein of head

Synonyms
Product description

head initiation complex; connects head to neck

EC number (for enzymes)


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Notes

Function

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Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0098005

viral head-tail joining

PMID:726265[1]

IMP: Inferred from Mutant Phenotype

P

Fig. 3 and 4, text on page 33

complete

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Interactions

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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</protect>

Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MKFNVLSLFA PWAKMDERNF KDQEKEDLVS ITAPKLDDGA REFEVSSNEA ASPYNAAFQT
IFGSYEPGMK TTRELIDTYR NLMNNYEVDN AVSEIVSDAI VYEDDTEVVA LNLDKSKFSP
KIKNMMLDEF SDVLNHLSFQ RKGSDHFRRW YVDSRIFFHK IIDPKRPKEG IKELRRLDPR
QVQYVREIIT ETEAGTKIVK GYKEYFIYDT AHESYACDGR MYEAGTKIKI PKAAVVYAHS
GLVDCCGKNI IGYLHRAVKP ANQLKLLEDA VVIYRITRAP DRRVWYVDTG NMPARKAAEH
MQHVMNTMKN RVVYDASTGK IKNQQHNMSM TEDYWLQRRD GKAVTEVDTL PGADNTGNME
DIRWFRQALY MALRVPLSRI PQDQQGGVMF DSGTSITRDE LTFAKFIREL QHKFEEVFLD
PLKTNLLLKG IITEDEWNDE INNIKIEFHR DSYFAELKEA EILERRINML TMAEPFIGKY
ISHRTAMKDI LQMTDEEIEQ EAKQIEEESK EARFQDPDQE QEDF
Length

524

Mol. Wt

61.033 kDa

pI

5.3 (calculated)

Extinction coefficient

64,290 - 64,665 (calc based on 21 Y, 6 W, and 3 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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<motif_map/>

Structure

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Structures

<beststructure> gene=Phage_T4_20 taxon=10665 </beststructure>

Models

View models at:

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</protect>

Structure figures

Notes

Gene Product Resources


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links



References


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Hsiao, CL & Black, LW (1978) Head morphogenesis of bacteriophage T4. III. The role of gene 20 in DNA packaging. Virology 91 26-38 PubMed

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Expression


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Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

Cellular Levels


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Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
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Notes

Transcription and Transcriptional Regulation


<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
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|} </protect>

Notes

Translation and Regulation of Translation


<gbrowseImage> name=NC_000866:101187..101227 source= bacteriophage_T4 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.


Notes

Turnover and Regulation of Turnover

</protect>

Notes

Experimental


Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies

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Type Reference Notes
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Expression Resources

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Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to Phage_T4_20 Expression


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links



References


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Evolution


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Homologs Families Links References Suggestions

Homologs in Other Organisms


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Organism Homologs (Statistics) Comments
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Do-It-Yourself Web Tools


Notes

Families


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Database Accession Notes
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Notes

Links



References


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Categories


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