Phage T3 16:On One Page
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Quickview | | Gene | | Product(s) | | Expression| | Evolution | | References | |
Quickview
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
<protect>
| Standard Name |
16 |
|---|---|
| Gene Synonym(s) | |
| Product Desc. | |
| Product Synonyms(s) |
product 47; previously gene 1.95 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
</protect> <protect></protect>
Notes
References
See Help:References for how to manage references in EcoliWiki.
Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
<protect>
Nomenclature
<protect>
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
16 |
|---|---|
| Mnemonic |
previously gene 1.95 |
| Synonyms |
|
| edit table |
</protect> </protect>
Notes
Location(s) and DNA Sequence
<protect>
<protect>
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
NC_003298: 20891..40671 |
||||
| edit table |
</protect> </protect>
Notes
Sequence Features
<protect>
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Alleles and Phenotypes
<protect>
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
</protect>
Notes
Genetic Resources
<protect>
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Accessions in Other Databases
<protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
<protect>
| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
internal virion protein D |
|---|---|
| Synonyms |
product 47; previously gene 1.95 |
| Product description | |
| EC number (for enzymes) |
|
| edit table |
</protect> <protect></protect>
Notes
Function
<protect>
Gene Ontology
<protect>
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| edit table |
</protect>
Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
</protect> </protect>
Notes
Localization
<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Structure and Physical Properties
<protect>
Physical Properties
<protect>
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MDKYDKNVPS DYDGLFQKEA DANGVSYDLL RKVAWTESRF VPTAKSKTGP LGIMQFTKAT ANALGLRVTD GPDDDRLNPE LAINAAAKHL AGLVGKFDGD ELKAALAYNQ GEGRLGNPQL EAYSKGDFAS ISEEGRNYLR NLLDVAKSPM AGQLETFGGI TPKGKGIPAD VGLAGIDHSQ KVTQELPEST SFDVKGIEQE APAKPFAKDF WETHGETLDE YNSRSTFFGF KNATEAELSN SVAGMAFRAG RLDNGFDVFK DTITPTRWNS HIWTPEELEK IRTEVKNPAY INVVTGGSPE NLDDLIKLAN ENFENDSRSA EAGLGAKLSA GIIGAGVDPL SYVPMVGVTG KSFKLINKAL VVGAESAALN VASEGLRTSV AGGDADYSGA ALGGFVFGAG MSAISDAIAA GLKRSKPETE FDNEFIGPMM RMEARETARN ANSTDLSRMN TDNMKFEGEH NGVPYEDLPT EKGAVVLHDG SVISANNPIN PKTLKEFSEV DPEKAARGIK LAGFTEIGLK TLGSDDADIR RVAIDLVRSP TGMQSGASGK FGATASDIHE RLHGTDQRTY NDLYKAMSDA MKDPEFSTGG AKMSREETRY TIYRRAALAI ERPELQKALT PSERIVMDTI KRHFDTKREL MENPAIFGNT KSVSIFPESR HKGTYVPHVY DRHAKALMIQ RYGAEGLQEG IARSWMNSYV SRPGVKVRVD EMLKELHGVK EVTPEMVEKY AMDKAYGISH SDQFTNSSII EENIEGLVGI ENNSFLEARN LFDSDLSITM PDGQQFSVND LRDFDMFRIM PAYDRRINGD IAIMGSTGKT TKELKDEILA LKAKAEGDGK KTGEVHALMD TVKILTGRAR RNQDTVWETT LRSINDLGFF AKNAYMGAQN ITEIAGMIVT GNVRALGHGI PILRDTLYKS KPVSAKELKE LHASLFGKEV DQLIRPQRAD IVQRLREATD TGPVVANIVG TLKYSTQELA ARSPWTKLLN GTTNYLLDAA RQGMLGDVIS ATLTGKTTRW EKEGFLRGAS VTPEQMAGIK SLIKEHMVRG EDGKFTVKDK QAFSMDPRAM DLWRLADKVA DEAMLRPHKV SLQDSHAFGA LGKMVMQFKS FTIKSLNSKF LRTFYDGYKN NRAIDAALSI ITSMGLAGGF YAMAAHVKAY ALPKEKRKEY LERALDPTMI AHAALSRSSQ LGAPLAMADL VGGVLGFESS KMARSTILPK DTMKERDPNK PYTSREVMGA MGSNLLEQMP SAGFVANVGA TLMNAAGVVN SPNKATEQDF MTGLMNSTKE LVPNDPLTQQ LVVKIYEANG VNLRERKK |
| Length |
1,318 |
| Mol. Wt |
144.022 kDa |
| pI |
6.7 (calculated) |
| Extinction coefficient |
98,670 (calc based on 33 Y, 9 W, and 0 C residues) |
| edit table |
</protect>
Domains/Motifs/Modification Sites
|
<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
</protect> |
<motif_map/> |
|
Structure
</protect> | </protect>
Structure figures<protect> | ||||||
Notes
Gene Product Resources
<protect>
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Accessions in Other Databases
<protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
<protect>
| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
Expression
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Overview | Transcription | Translation | Turnover | Experimental | Links | References | Suggestions |
Overview
Cellular Levels
<protect>
See Help:Cellular levels
| Molecule | Organism or Strain | Value | Units | Experimental Conditions | Assay used | Notes | Reference(s) |
|---|---|---|---|---|---|---|---|
| edit table |
</protect>
Notes
Transcription and Transcriptional Regulation
<protect>
| <protect>
See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.
</protect> |
</protect>
Notes
Translation and Regulation of Translation
<protect><gbrowseImage>
name=NC_003298:28783..28823
source= bacteriophage_T3
type=Gene+DNA_+Protein
preset=Nterminus
</gbrowseImage>
This picture shows the sequence around the N-terminus.
</protect>
Notes
Turnover and Regulation of Turnover
</protect>
Notes
Experimental
<protect>
Mutations Affecting Expression
<protect>
See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.
| Allele Name | Mutation | Phenotype | Reference |
|---|---|---|---|
| edit table |
</protect>
Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.
| Type | Reference | Notes |
|---|---|---|
| edit table |
</protect>
Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.
| Resource Name | Resource Type | Description | Source | Notes |
|---|---|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Accessions Related to Phage_T3_16 Expression
<protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
<protect>
| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
Evolution
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Homologs | Families | Links | References | Suggestions |
Homologs in Other Organisms
<protect>
See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.
| Organism | Homologs (Statistics) | Comments |
|---|---|---|
| edit table |
</protect>
Do-It-Yourself Web Tools
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Notes
Families
<protect>
See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
<protect>
| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
