Phage P2 T:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

T

Gene Synonym(s)
Product Desc.

gpT; essential tail protein; putative tail length determinator

Product Synonyms(s)

P2p27

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links

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dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

T

Mnemonic
Synonyms


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Notes

Location(s) and DNA Sequence

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<protect> <protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

NC_1895: 19750..22397
<gbrowseImage> name=NC_001895:19750..22397 source=bacteriophage_P2 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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<protect> See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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<protect> See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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<protect> See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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Product(s)

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Nomenclature

<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

T

Synonyms

P2p27

Product description

gpT; essential tail protein; putative tail length determinator

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0098015

virus tail

PMID:4607804

IMP: Inferred from Mutant Phenotype

C

Figure 3

complete

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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MSNNVKLQVL LRAVDQASRP FKSIRTASKS LSGDIRETQK SLRELNGHAS RIEGFRKTSA
QLAVTGHALE KARQEAEALA TQFKNTERPT RAQAKVLESA KRAAEDLQAK YNRLTDSVKR
QQRELAAVGI NTRNLAHDEQ GLKNRISETT AQLNRQRDAL VRVSAQQAKL NAVKQRYQAG
KELAGNMASV GAAGVGIAAA GTMAGVKLLM PGYEFAQKNS ELQAVIGVAK DSAEMAALRK
QARQLGDNTA ASADDAAGAQ IIIAKAGGDV DAIQAATPVT LNMALANRRT MEENAALLMG
MKSAFQLSND KVAHIGDVLS MTMNKTAADF DGMSDALTYA APVAKNAGVS IEETAAMVGA
LHDAKITGSM AGTGSRAVLS RLQAPTGKAW DALKELGVKT SDSKGNTRPI FTILKEMQAS
FEKNRLGTAQ QAEYMKTIFG EEASSAAAVL MTAASTGKLD KLTAAFKASD GKTAELVNIM
QDNLGGDFKA FQSAYEAVGT DLFDQQEGAL RKLTQTATKY VLKLDGWIQK NKSLASTIGI
IAGGALALTG IIGAIGLVAW PVITGINAII AAAGAMGAVF TTVGSAVMTA IGAISWPVVA
VVAAIVAGAL LIRKYWEPVS AFFGGVVEGL KAAFAPVGEL FTPLKPVFDW LGEKLQAAWQ
WFKNLIAPVK ATQDTLNRCR DTGVMFGQAL ADALMLPLNA FNKLRSGIDW VLEKLGVINK
ESDTLDQTAA RTHTATYGTG DYIPATSSYA GYQAYQPVTA PAGRSYVDQS KNEYHISLTG
GTAPGTQLDR QLQDALEKYE RDKRARARAS MMHDG
Length

815

Mol. Wt

86.524 kDa

pI

9.8 (calculated)

Extinction coefficient

73,340 - 73,465 (calc based on 16 Y, 9 W, and 1 C residues)

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Domains/Motifs/Modification Sites <protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

593 - 612

Predicted membrane-spanning helix.

TMD predicted by TMHMM[1]

Domain

566 - 588

Predicted membrane-spanning helix.

TMD predicted by TMHMM[1]

Domain

537 - 559

Predicted membrane-spanning helix.

TMD predicted by TMHMM[1]


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Structure
<protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_P2_T taxon=10679 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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<protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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Expression

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Overview

Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
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Notes

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_001895:19830..19870 source=bacteriophage_P2 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

Turnover and Regulation of Turnover

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Notes

Experimental

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<protect> Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes
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Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to Phage P2 T Expression

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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Evolution

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Homologs in Other Organisms

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<protect> See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments
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Do-It-Yourself Web Tools

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Notes

Families

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<protect> See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes
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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed

Categories

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