Phage P1 repA:On One Page
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Quickview | | Gene | | Product(s) | | Expression| | Evolution | | References | |
Quickview
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
<protect>
| Standard Name |
repA |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
product acts to initiate replication from oriR, to repress its own synthesis(via interaction with incA) and to pair sets of iterated binding sites so as to control plasmid copy number; 100 pct identical to previously predicted product of repA of P1, Swissprot:REP5_ECOLI; similar to replication initiator proteins of certain low and moderate copy number plasmids; |
| Product Synonyms(s) |
gp061 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
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Notes
References
See Help:References for how to manage references in EcoliWiki.
Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
repA |
|---|---|
| Mnemonic | |
| Synonyms |
|
| edit table |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
NC_005856: 60051..64351 |
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Notes
Sequence Features
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
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Notes
Alleles and Phenotypes
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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Resources
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See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
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Notes
Links
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| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
Categories
Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
RepA |
|---|---|
| Synonyms |
gp061 |
| Product description |
product acts to initiate replication from oriR, to repress its own synthesis(via interaction with incA) and to pair sets of iterated binding sites so as to control plasmid copy number; 100 pct identical to previously predicted product of repA of P1, Swissprot:REP5_ECOLI; similar to replication initiator proteins of certain low and moderate copy number plasmids; |
| EC number (for enzymes) |
|
| edit table |
</protect> <protect></protect>
Notes
Function
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Gene Ontology
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See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| edit table |
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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
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Notes
Localization
<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
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Notes
Structure and Physical Properties
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Physical Properties
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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MNQSFISDIL YADIESKAKE LTVNSNNTVQ PVALMRLGVF VPKPSKSKGE SKEIDATKAF SQLEIAKAEG YDDIKITGPR LDMDTDFKTW IGVIYAFSKY GLSSNTIQLS FQEFAKACGF PSKRLDAKLR LTIHESLGRL RNKGIAFKRG KDAKGGYQTG LLKVGRFDAD LDLIELEADS KLWELFQLDY RVLLQHHALR ALPKKEAAQA IYTFIESLPQ NPLPLSFARI RERLALQSAV GEQNRIIKKA IEQLKTIGYL DCSIEKKGRE SFVIVHSRNP KLKLPE |
| Length |
286 |
| Mol. Wt |
32.222 kDa |
| pI |
9.8 (calculated) |
| Extinction coefficient |
22,920 - 23,170 (calc based on 8 Y, 2 W, and 2 C residues) |
| edit table |
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Domains/Motifs/Modification Sites
|
<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
</protect> |
<motif_map/> |
|
Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
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| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
Expression
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Overview | Transcription | Translation | Turnover | Experimental | Links | References | Suggestions |
Overview
Cellular Levels
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See Help:Cellular levels
| Molecule | Organism or Strain | Value | Units | Experimental Conditions | Assay used | Notes | Reference(s) |
|---|---|---|---|---|---|---|---|
| edit table |
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Notes
Transcription and Transcriptional Regulation
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| <protect>
See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.
</protect> |
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Notes
Translation and Regulation of Translation
<protect><gbrowseImage>
name=NC_005856:62611..62651
source=bacteriophage_P1
flip=1
type=Gene+DNA_+Protein
preset=Nterminus
</gbrowseImage>
This picture shows the sequence around the N-terminus.
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Notes
Turnover and Regulation of Turnover
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Notes
Experimental
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Mutations Affecting Expression
<protect>
See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.
| Allele Name | Mutation | Phenotype | Reference |
|---|---|---|---|
| edit table |
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Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.
| Type | Reference | Notes |
|---|---|---|
| edit table |
</protect>
Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.
| Resource Name | Resource Type | Description | Source | Notes |
|---|---|---|---|---|
| edit table |
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Notes
Accessions Related to Phage_P1_repA Expression
<protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
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Notes
Links
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| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
Evolution
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Homologs | Families | Links | References | Suggestions |
Homologs in Other Organisms
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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.
| Organism | Homologs (Statistics) | Comments |
|---|---|---|
| edit table |
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Do-It-Yourself Web Tools
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Notes
Families
<protect>
See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.
| Database | Accession | Notes |
|---|---|---|
| edit table |
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Notes
Links
<protect>
| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
