Phage P1 dmt:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
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Quickview

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

dmt

Gene Synonym(s)

{Dam}

Product Desc.

bifunctional DNA methyltransferase; methylates DNA at N6 adenine in GATC sequences and perhaps at C5 cytosine in unknown sequences; region of aa 488-755 similar to bacterial N6-adenine specific DNA methyltransferase Dam Escherichia coli and its homologs; region of aa 8-132 similar to C5-cytosine specific DNA methyltransferases of Bacillus subtilis bacteriophage SPR(439 aa) PID:g216171,of Bacillus amyloliquefaciens phage H2 (503 aa) PID:g901818 and their homologs;

Product Synonyms(s)

gp069

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links



        


Notes

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References

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Gene

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

dmt

Mnemonic
Synonyms

{Dam}

</protect>

Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

NC_005856: 61884..73204
<gbrowseImage> name=NC_005856:61884..73204 source=bacteriophage_P1 preset=GeneLocation </gbrowseImage>

</protect>

Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes


Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments


Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes


Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference


Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes


Notes

Links

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References

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Categories

Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Dmt

Synonyms

gp069

Product description

bifunctional DNA methyltransferase; methylates DNA at N6 adenine in GATC sequences and perhaps at C5 cytosine in unknown sequences; region of aa 488-755 similar to bacterial N6-adenine specific DNA methyltransferase Dam Escherichia coli and its homologs; region of aa 8-132 similar to C5-cytosine specific DNA methyltransferases of Bacillus subtilis bacteriophage SPR(439 aa) PID:g216171,of Bacillus amyloliquefaciens phage H2 (503 aa) PID:g901818 and their homologs;

EC number (for enzymes)



Notes

Function

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Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status


Interactions

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes


Notes

Structure and Physical Properties

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Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence
MKELCYGSVC SGIEAASIAW EPLGMRPAWF AEIEPFPSAV LAHRWPHVAN LGDMTKLAKK
VLAGEIESPD VLVWGTPCQA FSIAGLRGGL DDERGALTLK YVELANAIDD KRSESFLKPT
VIVWENVPGV LSSADNAFGC FLAGLAGEDA PFEPGDRPES GKSNAFWRWD GKTGCHAPKW
PQCGCIYGPQ RKVAWRILDA QYFGVAQRRR RVFVVASART DLDPATVLFE FEGVRRNIAP
RRKKKEIASA IIANGAAISG ESLNPCLHAD MPPSMKSTKA VNAFRMAAFG EYIDDETAST
VKARDFKDAT DLAVFSSTGA GFWSEGHGTL RAREQESHEH LVTLAFPERM SGTQHAATKN
TSPSLMAKNP TAVCYEVRNA EVAVRRLTPV ECERLQGFPD GHTLIPTEKR KKVNSDELAY
LRNHYPDLSE EEAAMLAADG PRYKAIGNSM AIPVMRWIGD RITKAVCRQK EGSETKERKV
KPAAEFERSI FKWAGGKFGV LEQIFRYLPE GKRLIEPFVG GGAVFTNAGY QENLLNDVNA
DLINFYKTLQ REAHSLITLA HRFFQDYNTQ EGYLAVRNAF NKQVYDDLHR AAAFLFLNRH
CFNGLTRYNQ AGEFNVGYGK YKTPYFPLQE MEAFLGAEGR SEFVCGDFAA VIEAAGEGDV
IFCDPPYEPL PNTEGFTNYS GHDFKFEEQK RLVSLLTDAH RRGAKVLITN SGAPNIRELY
HDSGFRVEPL FARRSVSCKG DTRGVAHDVL GILL
Length

754

Mol. Wt

83.628 kDa

pI

7.2 (calculated)

Extinction coefficient

98,780 - 100,655 (calc based on 22 Y, 12 W, and 15 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

<motif_map/>

Structure

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Structures

<beststructure> gene=Phage_P1_dmt taxon=10678 </beststructure>

Models

View models at:

</protect>

Structure figures

Notes

Gene Product Resources


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference


Notes

Accessions in Other Databases


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes


Notes

Links



References


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Categories


Expression


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Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

Cellular Levels


See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)


Notes

Transcription and Transcriptional Regulation


<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

|} </protect>

Notes

Translation and Regulation of Translation


<gbrowseImage> name=NC_005856:66392..66432 source=bacteriophage_P1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.


Notes

Turnover and Regulation of Turnover

</protect>

Notes

Experimental


Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference


Expression Studies

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Type Reference Notes


Expression Resources

See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes


Notes

Accessions Related to Phage_P1_dmt Expression


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes


Notes

Links



References


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Categories


Evolution


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Homologs Families Links References Suggestions

Homologs in Other Organisms


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Organism Homologs (Statistics) Comments


Do-It-Yourself Web Tools


Notes

Families


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Database Accession Notes


Notes

Links



References


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Categories