Phage P1 darA:On One Page
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Quickview | | Gene | | Product(s) | | Expression| | Evolution | | References | |
Quickview
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
<protect>
| Standard Name |
darA |
|---|---|
| Gene Synonym(s) |
{Vad &/or Tsu?} |
| Product Desc. |
defense against restriction; internal head protein that is proteolytically processed during head maturation; region of aa 157-279 28 pct identical to region of aa 702-822 of Methanosarcina acetivorans chromosome segregation protein (AAM07677, 1175 aa); region of aa 107-293 23 pct identical to region of aa 29-202 of P1 Hdf; 100 pct identical to previously identified product of darA of P1 PID:g2462943; |
| Product Synonyms(s) |
gp024 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
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Notes
References
See Help:References for how to manage references in EcoliWiki.
Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
<protect>
Nomenclature
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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
darA |
|---|---|
| Mnemonic | |
| Synonyms |
{Vad &/or Tsu?} |
| edit table |
</protect> </protect>
Notes
Location(s) and DNA Sequence
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<protect>
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
NC_005856: 24066..33661 |
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| edit table |
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Notes
Sequence Features
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
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Notes
Alleles and Phenotypes
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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
| edit table |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
</protect>
Notes
Genetic Resources
<protect>
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Accessions in Other Databases
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See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
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| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
DarA |
|---|---|
| Synonyms |
gp024 |
| Product description |
defense against restriction; internal head protein that is proteolytically processed during head maturation; region of aa 157-279 28 pct identical to region of aa 702-822 of Methanosarcina acetivorans chromosome segregation protein (AAM07677, 1175 aa); region of aa 107-293 23 pct identical to region of aa 29-202 of P1 Hdf; 100 pct identical to previously identified product of darA of P1 PID:g2462943; |
| EC number (for enzymes) |
|
| edit table |
</protect> <protect></protect>
Notes
Function
<protect>
Gene Ontology
<protect>
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
|
GO:0046797 |
viral procapsid maturation |
PMID:3029955 |
IMP: Inferred from Mutant Phenotype |
P |
Text on page 169-170, Fig. 4 |
complete | ||
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</protect>
Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
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Notes
Localization
<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
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Notes
Structure and Physical Properties
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Physical Properties
<protect>
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MEQFNINKGM TIKPGLDVLP PPVTDDEYRA LMAGEDRYLM TESNTLEEIE ATFFYDTPIH WCATDLLEAI SSTRLQLHRT MQAFVRALNQ KLNGTGISAG SDKTGDVAQS GARAIGGAEI GRARNVNGLP VLPAIIPLSD GQTISILFHS PTAENRITNS DTLVAFQFLL NKKDVTHTVA PMSGRDMTLA QVTMKLANLA EKNSAKFQRA QKKKKALVDE ITQLQADSDQ KEDAMSDLAD QVAAVEGQKA DLEQKINAVA SEADSLYEEN ERLQGEIDRL NRTGGRDTIA PAGMTGGHSR ALTDRLASIK NRMHMDGEAT LSNGASMKQF IGDGEGYIQL TDPDGSVYMI KAKSIQGVDM ADAIGKLFKA YKAGNVSEYL VQPEEHKPEN VEPESAEDTG SSSPEPEVSV GAYRYALQMR PAAPGAIPEG NKAILPRPDE GDPYYEYARY GIATYDTPLS DQQMSEYDLK LLPREDSFDF LAKTLTNGPF GKYAQKALEL ATNSPDEFRV MLKTQFQKTF PNIAFPGGAG TEKMVQSMIN ALQAEVGEIT QPEPAPAQPD ETVSEADAEA NKAIEYLNNV MDMQSTDMAE IRNARGNVRE AIAALQTAGR FEENEELVNG AARHLADLLV AIQKAGVAA |
| Length |
639 |
| Mol. Wt |
69.481 kDa |
| pI |
4.6 (calculated) |
| Extinction coefficient |
32,320 - 32,445 (calc based on 18 Y, 1 W, and 1 C residues) |
| edit table |
</protect>
Domains/Motifs/Modification Sites
|
<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
</protect> |
<motif_map/> |
|
Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Accessions in Other Databases
<protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
<protect>
| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
Expression
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Overview | Transcription | Translation | Turnover | Experimental | Links | References | Suggestions |
Overview
Cellular Levels
<protect>
See Help:Cellular levels
| Molecule | Organism or Strain | Value | Units | Experimental Conditions | Assay used | Notes | Reference(s) |
|---|---|---|---|---|---|---|---|
| edit table |
</protect>
Notes
Transcription and Transcriptional Regulation
<protect>
| <protect>
See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.
</protect> |
</protect>
Notes
Translation and Regulation of Translation
<protect><gbrowseImage>
name=NC_005856:29803..29843
source=bacteriophage_P1
flip=1
type=Gene+DNA_+Protein
preset=Nterminus
</gbrowseImage>
This picture shows the sequence around the N-terminus.
</protect>
Notes
Turnover and Regulation of Turnover
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Notes
Experimental
<protect>
Mutations Affecting Expression
<protect>
See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.
| Allele Name | Mutation | Phenotype | Reference |
|---|---|---|---|
| edit table |
</protect>
Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.
| Type | Reference | Notes |
|---|---|---|
| edit table |
</protect>
Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.
| Resource Name | Resource Type | Description | Source | Notes |
|---|---|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Accessions Related to Phage_P1_darA Expression
<protect>
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
<protect>
| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
Evolution
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
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Homologs in Other Organisms
<protect>
See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.
| Organism | Homologs (Statistics) | Comments |
|---|---|---|
| edit table |
</protect>
Do-It-Yourself Web Tools
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Notes
Families
<protect>
See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.
| Database | Accession | Notes |
|---|---|---|
| edit table |
</protect> <protect></protect>
Notes
Links
<protect>
| Name | URL | Comments |
|---|---|---|
| edit table |
</protect>
References
See Help:References for how to manage references in EcoliWiki.
Categories
