Phage P1 bplA:On One Page

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

<protect>

Standard Name

bplA

Gene Synonym(s)

{gp3?}

Product Desc.

baseplate structural protein; region of aa 27-313 20 pct identical to phage T4 baseplate wedge structural protein (VG6_BPT4, 660 aa); region of aa 90..477 100 pct identical to previously predicted product of pep43 orf of P1 PID:g2661103; region of aa 1..63 100 pct identical to previously predicted product of pep44a orf of P1 PID:g2661102;

Product Synonyms(s)

gp035

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links

porteco.png

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

edit table

</protect> <protect></protect>

Notes

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

Gene

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

<protect>

Nomenclature

[back to top]


<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

bplA

Mnemonic
Synonyms

{gp3?}

edit table

</protect> </protect>

Notes

Location(s) and DNA Sequence

[back to top]


<protect> <protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

NC_005856: 36336..43501
<gbrowseImage> name=NC_005856:36336..43501 source=bacteriophage_P1 preset=GeneLocation </gbrowseImage>

edit table

</protect> </protect>

Notes

Sequence Features

[back to top]


<protect> See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
edit table

</protect> <protect></protect>

Notes

Alleles and Phenotypes

[back to top]


<protect> See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
edit table

</protect> <protect></protect>

Notes

Genetic Interactions

[back to top]


<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table

</protect>

Notes

Genetic Resources

[back to top]


<protect> See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
edit table

</protect> <protect></protect>

Notes

Accessions in Other Databases

[back to top]


<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table

</protect> <protect></protect>

Notes

Links

[back to top]


<protect>

</protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

Product(s)

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

BplA

Synonyms

gp035

Product description

baseplate structural protein; region of aa 27-313 20 pct identical to phage T4 baseplate wedge structural protein (VG6_BPT4, 660 aa); region of aa 90..477 100 pct identical to previously predicted product of pep43 orf of P1 PID:g2661103; region of aa 1..63 100 pct identical to previously predicted product of pep44a orf of P1 PID:g2661102;

EC number (for enzymes)


edit table

</protect> <protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0098025

virus tail, baseplate

PMID:15489417

ISA: Inferred from Sequence Alignment

UniProtKB:P19060


C

Text on 7057

complete

edit table

</protect>

Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table

</protect> </protect>

Notes

Localization

<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

</protect> <protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MSKTTPTKDS IRAEFEELVE KDSFWSKFVG SQFVSMLTLF ITQIVYRCFQ YADAALAEGF
ISTATRRSSI LAAAETNSYV GTKPTPSSGM IEITATSEDA PAVIPKNMPL ISDDQYPYMT
MDVCRLVDGT GTVEVAQLEI QEVTYTVTAA KEFLEVVLSK ALTAVCYKLE VFVTTDGKTT
QWSSSTMFRL AGSKSQVYVE FYKPSEQLGV RFGDGLIGQI PPEGSTITLK VWCTNGDITL
VAGQNLTPVD SAANLANLIS VKTTTPITAG TDAETTEITR NRAQYYLAYD DQVVWGGDYT
YFLVRNIPGL SWVKAWGEGQ QEKLDGAYNV QNINKIFISG WHPNKSQSEL EEMILAAFKK
VPNELNKKFS YKEVRKLPFK ITITGRISAS LTIENVTDEL KSALETKFGR DSTFFDPNRV
GKYILIKKKD VWAFIETLGY FRDFYLEFVE WNESNGFYDF VYLDTENSTF NISYEEE
Length

477

Mol. Wt

53.578 kDa

pI

4.7 (calculated)

Extinction coefficient

82,280 - 82,780 (calc based on 22 Y, 9 W, and 4 C residues)

edit table

</protect>

Domains/Motifs/Modification Sites

<protect> See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
edit table

</protect>

<motif_map/>

Structure
<protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_P1_bplA taxon=10678 </beststructure>

Models

View models at:

edit table

</protect>

</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


<protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

</protect> <protect></protect>

Notes

Accessions in Other Databases

[back to top]


<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table

</protect> <protect></protect>

Notes

Links

[back to top]


<protect>

</protect>


References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Expression

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

Cellular Levels

[back to top]


<protect> See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
edit table

</protect>

Notes

Transcription and Transcriptional Regulation

[back to top]


<protect>

<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
edit table

</protect>

</protect>

Notes

Translation and Regulation of Translation

[back to top]


<protect><gbrowseImage> name=NC_005856:40615..40655 source=bacteriophage_P1 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

Turnover and Regulation of Turnover

</protect>

Notes

Experimental

[back to top]


<protect> Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
edit table

</protect>

Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes
edit table

</protect>

Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
edit table

</protect> <protect></protect>

Notes

Accessions Related to Phage_P1_bplA Expression

[back to top]


<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
edit table

</protect> <protect></protect>

Notes

Links

[back to top]


<protect>

</protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Evolution

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


<protect> See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments
edit table

</protect>

Do-It-Yourself Web Tools

<protect></protect>

Notes

Families

[back to top]


<protect> See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes
edit table

</protect> <protect></protect>

Notes

Links

[back to top]


<protect>

</protect>

References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=Phage_P1_bplA:On_One_Page&oldid=842483"