Phage N15 16:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

16

Gene Synonym(s)

gene 16 [1], N15p16 [1]

Product Desc.

tail length tape measure [1]

Product Synonyms(s)

N15p16 [1]

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links

porteco.png

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

16

Mnemonic
Synonyms

gene 16 [1], N15p16 [1]


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Notes

Location(s) and DNA Sequence

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<protect> <protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

NC_001901: 10258..12974
<gbrowseImage> name=NC_001901:10258..12974 source=bacteriophage_N15 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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<protect> See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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<protect> See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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<protect> See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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Product(s)

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Nomenclature

<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

gp16

Synonyms

N15p16 [1]

Product description

tail length tape measure [1]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

<protect> See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MAQTAVGDLV VNLDVNSTKF NEQLSYVKKE LKQTGNTAND EALRIQQSFS RQENAARKAG
ISVGQYNAAM RMLPAQFTDV ATQLAGGQNP WLILLQQGGQ VKDSFGGIIP TFRALLGTIS
PLMVGIGALS VATGALFYAW YQGSSTLSDF NKTLVLSGNT AGLTADRMLA LARNGQAAGL
TFNQTSEALT ELINAGVRTG SRFDEMSQAV ARFTDASGVP VEKVAAAYGK LATDPTSGLI
AMAQQFHNVT AEQIAHVAQL QRAGDEAGAL QAANEAATAG FNDQTKAIRD NMGTIESSAD
SLKRAFKSMW DAALDIGRPD TAQEMVAKAE AAFKKADEIW NLRKGDRYVN DEARARFWND
RETARLALDM AQQQAGIARA NEENASREAA AESDRQKYAA QAQANYAKTQ TALEKYTARQ
SELNKALKEG RILQADYNIN LAAAKKEYED TLKKPKKTPA IRTPAGARAT DTASAQTLEL
QAQLRTLQEH KSINDTISQQ RQELWRQQSR FTVLEEAAKT RTLSAEEKSL LASKSEVLSR
AELNAKLGDQ IVAQERLNRL QDTSQKYVTQ IGEKTRALAE SAGMSSRAAQ RRNEEAQLLQ
GWKNGGGSEN DAGYQNELQA LQAYYAEQDK LRDDWQSGAK SAWADYVDSA SDAYGQMKSF
ATSTFDGIGQ NMADMLTRGK ADWADFTRST LSMLTQILLK QAMVGLVDSA TTALGFAGGG
YTGSGGKYEP AGVVHRGEFV FTKEATNRIG VGNLYRMMKG YATGGYVGGG GTGPAAAPFG
VSVYAPVTVE NASGNAQQQN DGDRLGKAYQ QVINKSVNDG IARAIQPGGL IWNATNRR
Length

838

Mol. Wt

90.35 kDa

pI

8.9 (calculated)

Extinction coefficient

96,260 (calc based on 24 Y, 11 W, and 0 C residues)

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Domains/Motifs/Modification Sites

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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

119 - 141

Predicted membrane-spanning helix.

TMD predicted by TMHMM[2]


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<motif_map/>

tmhmm.php?gene=Phage_N15_16&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
<protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_N15_16 taxon=40631 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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<protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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Expression

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Overview

Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
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Notes

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_001901:10338..10378 source=bacteriophage_N15 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

Turnover and Regulation of Turnover

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Notes

Experimental

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<protect> Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies <protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes
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Expression Resources <protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to Phage N15 16 Expression

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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Evolution

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Homologs in Other Organisms

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<protect> See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments
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Do-It-Yourself Web Tools

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Notes

Families

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<protect> See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes
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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 NCBI: Enterobacteria phage N15, complete genome http://www.ncbi.nlm.nih.gov/nuccore/NC_001901 Cite error: Invalid <ref> tag; name "NC_001901" defined multiple times with different content Cite error: Invalid <ref> tag; name "NC_001901" defined multiple times with different content Cite error: Invalid <ref> tag; name "NC_001901" defined multiple times with different content Cite error: Invalid <ref> tag; name "NC_001901" defined multiple times with different content Cite error: Invalid <ref> tag; name "NC_001901" defined multiple times with different content Cite error: Invalid <ref> tag; name "NC_001901" defined multiple times with different content Cite error: Invalid <ref> tag; name "NC_001901" defined multiple times with different content
  2. ↑ Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed

Categories

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