Phage N15 16:On One Page

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview

Gene

Gene Product(s)

Expression

Evolution

On One Page

Quickview |

Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

<protect>

Standard Name	16
Gene Synonym(s)	gene 16 , N15p16
Product Desc.	tail length tape measure
Product Synonyms(s)	N15p16
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links
edit table

</protect> See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]

Gene

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Nomenclature

[back to top]

<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	16
Mnemonic
Synonyms	gene 16 , N15p16
edit table

</protect>

Location(s) and DNA Sequence

[back to top]

<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
		NC_001901: 10258..12974 <gbrowseImage> name=NC_001901:10258..12974 source=bacteriophage_N15 preset=GeneLocation </gbrowseImage>	Gbrowse (Phage N15)	FASTA Dump
edit table

</protect>

Sequence Features

[back to top]

See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
edit table

Alleles and Phenotypes

[back to top]

See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
edit table

Genetic Interactions

[back to top]

Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
edit table

Genetic Resources

[back to top]

See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
edit table

Accessions in Other Databases

[back to top]

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
edit table

Links

[back to top]

Name	URL	Comments
edit table

Product(s)

[back to top]

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	gp16
Synonyms	N15p16
Product description	tail length tape measure
EC number (for enzymes)
edit table

Function

[back to top]

Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
edit table

Interactions

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
edit table

</protect>

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
edit table

Structure and Physical Properties

[back to top]

Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	MAQTAVGDLV VNLDVNSTKF NEQLSYVKKE LKQTGNTAND EALRIQQSFS RQENAARKAG ISVGQYNAAM RMLPAQFTDV ATQLAGGQNP WLILLQQGGQ VKDSFGGIIP TFRALLGTIS PLMVGIGALS VATGALFYAW YQGSSTLSDF NKTLVLSGNT AGLTADRMLA LARNGQAAGL TFNQTSEALT ELINAGVRTG SRFDEMSQAV ARFTDASGVP VEKVAAAYGK LATDPTSGLI AMAQQFHNVT AEQIAHVAQL QRAGDEAGAL QAANEAATAG FNDQTKAIRD NMGTIESSAD SLKRAFKSMW DAALDIGRPD TAQEMVAKAE AAFKKADEIW NLRKGDRYVN DEARARFWND RETARLALDM AQQQAGIARA NEENASREAA AESDRQKYAA QAQANYAKTQ TALEKYTARQ SELNKALKEG RILQADYNIN LAAAKKEYED TLKKPKKTPA IRTPAGARAT DTASAQTLEL QAQLRTLQEH KSINDTISQQ RQELWRQQSR FTVLEEAAKT RTLSAEEKSL LASKSEVLSR AELNAKLGDQ IVAQERLNRL QDTSQKYVTQ IGEKTRALAE SAGMSSRAAQ RRNEEAQLLQ GWKNGGGSEN DAGYQNELQA LQAYYAEQDK LRDDWQSGAK SAWADYVDSA SDAYGQMKSF ATSTFDGIGQ NMADMLTRGK ADWADFTRST LSMLTQILLK QAMVGLVDSA TTALGFAGGG YTGSGGKYEP AGVVHRGEFV FTKEATNRIG VGNLYRMMKG YATGGYVGGG GTGPAAAPFG VSVYAPVTVE NASGNAQQQN DGDRLGKAYQ QVINKSVNDG IARAIQPGGL IWNATNRR
Length	838
Mol. Wt	90.35 kDa
pI	8.9 (calculated)
Extinction coefficient	96,260 (calc based on 24 Y, 11 W, and 0 C residues)
edit table

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki. Type Residues Description Notes References Domain 119 - 141 Predicted membrane-spanning helix. TMD predicted by TMHMM edit table

<motif_map/> Click the image to view raw output from TMHMM.

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki. Structures <beststructure> gene=Phage_N15_16 taxon=40631 </beststructure> Models View models at: PSI-PRED Genomes TO Protein (GTOP) edit table

</protect> Structure figures Notes Gene Product Resources [back to top] See Help:Product_resources for help with entering or editing information in this section of EcoliWiki. Resource type Source Notes/Reference edit table Notes Accessions in Other Databases [back to top] See Help:Gene_accessions for help with entering information into the Gene Accessions table. Database Accession Notes edit table Notes Links [back to top] Name URL Comments edit table Expression [back to top] {{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css> Overview Cellular Levels [back to top] See Help:Cellular levels Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s) edit table Notes Transcription and Transcriptional Regulation [back to top] <protect> See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki. Transcription unit(s) edit table |} </protect> Notes Translation and Regulation of Translation [back to top] <gbrowseImage> name=NC_001901:10338..10378 source=bacteriophage_N15 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus. Notes Turnover and Regulation of Turnover </protect> Notes Experimental [back to top] Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki. Allele Name Mutation Phenotype Reference edit table Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki. Type Reference Notes edit table Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki. Resource Name Resource Type Description Source Notes edit table Notes Accessions Related to Phage N15 16 Expression [back to top] See Help:Gene_accessions for help with entering information into the Gene Accessions table. Database Accession Notes edit table Notes Links [back to top] Name URL Comments edit table Evolution [back to top] {{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css> Homologs in Other Organisms [back to top] See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki. Organism Homologs (Statistics) Comments edit table Do-It-Yourself Web Tools BLAST CDD InParanoid YOGY Notes Families [back to top] See Help:Evolution_families for help entering or editing information in this section of EcoliWiki. Database Accession Notes edit table Notes Links [back to top] Name URL Comments edit table References [back to top] See Help:References for how to manage references in EcoliWiki. Categories [back to top]