Phage Mu 42:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

42

Gene Synonym(s)

gene 42, Mup42 [1], Phage_Mu_42 [1]

Product Desc.

putative tape measure protein based on position and weak similarity with other tape measure proteins [1]; Haemophilus influenzae HI1514 homolog [1] [2]

Product Synonyms(s)

Mup42 [1]

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links



        

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Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 NCBI: Enterobacteria phage Mu, complete genome http://www.ncbi.nlm.nih.gov/nuccore/NC_000929.1
  2. ↑ Morgan, GJ et al. (2002) Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus. J. Mol. Biol. 317 337-59 PubMed

Gene

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Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

42

Mnemonic
Synonyms

gene 42, Mup42 [1], Phage_Mu_42 [1]


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</protect>

Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

NC_000929: 19987..30347
<gbrowseImage> name=NC_000929:19987..30347 source=bacteriophage_Mu preset=GeneLocation </gbrowseImage>

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</protect>

Notes

Sequence Features

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Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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Resource Resource Type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes
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Notes

Links

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References

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  1. ↑ 1.0 1.1 NCBI: Enterobacteria phage Mu, complete genome http://www.ncbi.nlm.nih.gov/nuccore/NC_000929.1

Categories

Product(s)

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

gp42 [1]

Synonyms

Mup42 [1]

Product description

putative tape measure protein based on position and weak similarity with other tape measure proteins [1]; Haemophilus influenzae HI1514 homolog [1] [2]

EC number (for enzymes)


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Notes

Function

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Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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</protect>

Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MTGKRLKASV IIDLNGNLSR RSRQYSNQIN ALSRSGQSSL RALRMEVVRV SGAIDRMGSL
STRTFRMLSA GALGIAGVGY TANKLFIGAA AQREQQIIAM NSLYHGDKVR AQAMMAWAKQ
NAKDTTWGLS GVLDEIRSSK GFGMTDEQTK QFITMLQDQG AMHGWDLPTA QGASLQLKQM
FARQQITAAD ANLLTGYGIN VYQALADATG TDVKKIRDLG TKGKLGMKSI LTVFRTLSEQ
SKGAQASAMN SWDGMFAQME ANLLEFRIKV ANSGPFEEIK NEMRRVLNWH DMADKSGELD
ALAENIGQKF LTTFRTVKIS AQELWRWLKP GKDALAWVDQ NIVSLKKLAA VLVSVWLANK
ALRAGWAVAK PSWQVASYPF KTGRRMWRWM RNRKRGQAGL PVPDAMTSET LLQGIGIQRV
FVINWPRGFG DYGSGGGRRV RSGGRMAPLL PRQPLLLSGP QPLALPAPRP VLALPPPGVP
VTARPAPLPL PGKSGLLSRL AGSAAGQLVT GTVGKLADAG RAVGGWFSGI GNKLAGSAIG
RVVTKGAGAL GWMGKGAGRA LSRLGGPVMG ALQLAPVLMD EQASTHEKAG AIGSTAGAWL
GGAVGSLAGP LGTVAGATLG SVAGEYLGGF VTDLYQKWTA TDKEPQEQKV NAEASLRVEL
GEGLRLTSSR VTEDGMGLNI YAGDNYITGW
Length

690

Mol. Wt

73.597 kDa

pI

10.7 (calculated)

Extinction coefficient

120,890 (calc based on 11 Y, 19 W, and 0 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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<motif_map/>

Structure

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_Mu_42 taxon=10677 </beststructure>

Models

View models at:

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</protect>

Structure figures

Notes

Gene Product Resources


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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links



References


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 NCBI: Enterobacteria phage Mu, complete genome http://www.ncbi.nlm.nih.gov/nuccore/NC_000929.1
  2. ↑ Morgan, GJ et al. (2002) Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus. J. Mol. Biol. 317 337-59 PubMed

Categories


Expression


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Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

Cellular Levels


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Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
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Notes

Transcription and Transcriptional Regulation


<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
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|} </protect>

Notes

Translation and Regulation of Translation


<gbrowseImage> name=NC_000929:24111..24151 source=bacteriophage_Mu type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.


Notes

Turnover and Regulation of Turnover

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Notes

Experimental


Mutations Affecting Expression <protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies

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Type Reference Notes
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Expression Resources

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Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to Phage_Mu_42 Expression


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Database Accession Notes
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Notes

Links



References


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Evolution


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Homologs Families Links References Suggestions

Homologs in Other Organisms


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Organism Homologs (Statistics) Comments
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Do-It-Yourself Web Tools


Notes

Families


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Database Accession Notes
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Notes

Links



References


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Categories


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