ECB 02838:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

ECB_02838

Gene Synonym(s)
Product Desc.

GspD, hypothetical type II secretion protein

Product Synonyms(s)
Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links



        

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Notes

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Gene

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Nomenclature

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<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ECB_02838

Mnemonic
Synonyms


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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

REL606

NC_012967: 3032814..3043114
<gbrowseImage> name=NC_012967:3036934..3038994 source=REL606 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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<protect> See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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<protect> See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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<protect> See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

<protect> See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

GspD, hypothetical type II secretion protein

Synonyms
Product description

GspD, hypothetical type II secretion protein

EC number (for enzymes)


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Notes

Function

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Gene Ontology

<protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions

<protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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Physical Properties

<protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MFWRDITLSV WRKKTTGLKT KKRLLPLVLA AALCSSPVWA EEATFTANFK DTDLKSFIET
VGANLNKTII MGPGVQGKVS IRTMTPLNER QYYQLFLNLL EAQGYAVVPM ENDVLKVVKS
SAAKVEPLPL VGEGSDNYAG DEMVTKVVPV RNVSVRELAP ILRQMIDSAG SGNVVNYDPS
NVIMLTGRAS VVERLTEVIQ RVDHAGNRTE EVIPLDNASA SEIARVLESL TKNSGENQPA
TLKSQIVADE RTNSVIVSGD PATRDKMRRL IRRLDSEMER SGNSQVFYLK YSKAEDLVDV
LKQVSGTLTA AKEEAEGTVG SGREVVSIAA SKHSNALIVT APQDIMQSLQ SVIEQLDIRR
AQVHVEALIV EVAEGSNINF GVQWASKDAG LMQFANGTQI PIGTLGAAIS QAKPQKGSTV
ISENGATTIN PDTNGDLSTL AQLLSGFSGT AVGVVKGDWM ALVQAVKNDS SSNVLSTPSI
TTLDNQEAFF MVGQDVPVLT GSTVGSNNSN PFNTVERKKV GIMLKVTPQI NEGNAVQMVI
EQEVSKVEGQ TSLDVVFGER KLKTTVLAND GELIVLGGLM DDQAGESVAK VPLLGDIPLI
GNLFKSTADK KEKRNLMVFI RPTILRDGMA ADGVSQRKYN YMRAEQIYRD EQGLSLMPHT
AQPVLPAQNQ ALPPEVRAFL NAGRTR
Length

686

Mol. Wt

74.186 kDa

pI

5.8 (calculated)

Extinction coefficient

42,400 - 42,525 (calc based on 10 Y, 5 W, and 1 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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<motif_map/>

Structure

<protect> See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures
Models
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Structure figures

Notes

Gene Product Resources


<protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases


<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links


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Expression


Overview

Intracellular Levels


<protect> See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
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Notes

Transcription and Transcriptional Regulation


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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
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Notes

Translation and Regulation of Translation


Notes

Turnover and Regulation of Turnover

Notes

Experimental


Mutations Affecting Expression

<protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies

<protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes
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Expression Resources

<protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to ECB_02838 Expression


<protect><protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links


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Evolution


Homologs in Other Organisms


<protect> See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments
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Do-It-Yourself Web Tools

Notes

Families


<protect> See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes
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Notes

Links


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