Cis Element:Phage lambda attP
Cis element summary table
| Standard Name |
lambda attP |
|---|---|
| Synonyms | |
| Function |
phage attachment site |
| Location |
approximately nt 27 571 - 27 813 (PMID:6246439[1]) attP core sequence located at nt 27 721 - 27 735 (PMID:6246439[1]) |
| SO terms |
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Notes
In the free phage, the att site is referred to as attP (phage attachment site) while the corresponding site in a host genome is called attB (bacterial attachment site). After integration occurs to create a prophage, these sites are then known as attL (left end of prophage) and attR (right end of prophage). Reviewed in Lambda II.[2]
Location and Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
Phage Lambda (NC_001416) |
NC_001416: 27571..27813 |
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Notes
Interactions
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Phage Lambda Int protein |
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|
Protein |
E. coli host protein IHF (Integration Host Factor) |
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|
Protein |
Phage Lambda Xis protein |
| ||
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Notes
Mutant alleles and phenotypes
| Allele | Nt change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
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Notes
Accessions
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
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Notes
References
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- ↑ 1.0 1.1 Hsu, PL et al. (1980) The lambda phage att site: functional limits and interaction with Int protein. Nature 285 85-91 PubMed
- ↑ Edited by Roger W. Hendrix, Jeffrey W. Roberts, Franklin W. Stahl and Robert A. Weisberg (1983) Lambda II (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY)
- ↑ Ross, W et al. (1979) Interaction of int protein with specific sites on lambda att DNA. Cell 18 297-307 PubMed
- ↑ 4.0 4.1 Thompson, JF et al. (1987) Protein-protein interactions in a higher-order structure direct lambda site-specific recombination. J. Mol. Biol. 195 481-93 PubMed
- ↑ Yin, S et al. (1985) Interaction of the lambda site-specific recombination protein Xis with attachment site DNA. Proc. Natl. Acad. Sci. U.S.A. 82 1040-4 PubMed