lpxD:Gene Product(s)

From EcoliWiki
Revision as of 02:29, 30 September 2008 by 127.0.0.1 (talk) (Data loaded by TableEdit_Loader.)
Jump to navigation Jump to search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

LpxD product

Synonyms

UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase product[1], B0179 product[2][1], OmsA product[2][1], Ssc product[2][1], OsmA product[2][1], FirA product[2][1], LpxD product[2][1]

Product description

UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-MONO[2][3]

EC number (for enzymes)
edit table

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

[back to top]


Gene Ontology

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0009245

lipid_A_biosynthesis

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0441

P

Seeded from EcoCyc 12.5 [4]

GO:0016740

transferase_activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011004

F

Seeded from EcoCyc 12.5 [4]

GO:0016740

transferase_activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc 12.5 [4]

GO:0016747

transferase_activity,_transferring_groups_other_than_amino-acyl_groups

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00523

F

Seeded from EcoCyc 12.5 [4]

GO:0008415

acyltransferase_activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0012

F

Seeded from EcoCyc 12.5 [4]

GO:0008610

lipid_biosynthesis

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0444

P

Seeded from EcoCyc 12.5 [4]

GO:0009245

lipid_A_biosynthesis

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007691

P

Seeded from EcoCyc 12.5 [4]

GO:0008415

acyltransferase_activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001451

F

Seeded from EcoCyc 12.5 [4]

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

required fields missing

GO:0009245

lipid_A_biosynthesis

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00523

P

Seeded from EcoCyc 12.5 [4]

GO:0042280

cell surface antigen activity, host-interacting

F

Seeded from Riley et al 2006 [1].

required fields missing

GO:0016747

transferase_activity,_transferring_groups_other_than_amino-acyl_groups

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007691

F

Seeded from EcoCyc 12.5 [4]


edit table

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

Partner Type Partner Notes
edit table

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes
edit table

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

[back to top]


Physical Properties

Sequence

at EcoCyc 

MPSIRLADLA QQLDAELHGD GDIVITGVAS MQSAQTGHIT FMVNPKYREH LGLCQASAVV
MTQDDLPFAK SAALVVKNPY LTYARMAQIL DTTPQPAQNI APSAVIDATA KLGNNVSIGA
NAVIESGVEL GDNVIIGAGC FVGKNSKIGA GSRLWANVTI YHEIQIGQNC LIQSGTVVGA
DGFGYANDRG NWVKIPQIGR VIIGDRVEIG ACTTIDRGAL DDTIIGNGVI IDNQCQIAHN
VVIGDNTAVA GGVIMAGSLK IGRYCMIGGA SVINGHMEIC DKVTVTGMGM VMRPITEPGV
YSSGIPLQPN KVWRKTAALV MNIDDMSKRL KSLERKVNQQ D
Mol. Wt

36.04 kDa (calc) [2]

pI

6.48[2]

Extinction coefficient

26930 - 27805 (calc based on 7 Y, 3 W, and 7 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes
edit table

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Structure

Structure Type Organism Accession Residues covered Notes
edit table

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Notes

Gene Product Resources

[back to top]


Resource type Source Notes/Reference
edit table

See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Notes

Accessions in Other Databases

[back to top]


Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-MONO

UniProt (EcoliWiki Page)

UniProt:P21645

PFAM (EcoliWiki Page)

PFAM:PF04613

RefSeq (EcoliWiki Page)

RefSeq:NP_414721

ModBase (EcoliWiki Page)

ModBase:P21645

edit table

See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=lpxD:Gene_Product(s)&oldid=495786"