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!align=left {{table_heading_style}} |Standard name
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''fcl''  
''fcl''  
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!align=left {{table_heading_style}} |Mnemonic
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!align=left {{table_heading_style}} |Synonyms
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''ECK2046, b2052, JW2037, yefB, wcaG''<ref name='LIB:Riley_2006'/>
''ECK2046, b2052, JW2037, yefB, wcaG''<ref name='LIB:Riley_2006'/>


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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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*[http://biocyc.org/ECOLI/sequence?object=EG11788 EcoCyc Sequence Dump]  
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Synonyms:zbc-3105::Tn10, zbd-3105::Tn10  
Synonyms:zbc-3105::Tn10, zbd-3105::Tn10  


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Revision as of 01:01, 9 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

fcl

Mnemonic
Synonyms

ECK2046, b2052, JW2037, yefB, wcaG[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

45.78 minutes 

MG1655: 2125214..2124249
gbrowse_img.php?coord=2124249..2125214&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 2059430..2060395
gbrowse_img.php?coord=2059430..2060395&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 2129327..2128362
gbrowse_img.php?coord=2128362..2129327&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 2216222..2215257
gbrowse_img.php?coord=2215257..2216222&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

Δfcl (Keio:JW2037)

deletion

deletion

PMID:16738554[2]

Shigen
CGSC9673[3]

wcaG::Tn5KAN

PMID:12519969[4]

ASAP

At position 619 in Minus orientation, contains plasmid pKD46.
ASAP strain name: FB20600

Δfcl-750::kan

PMID:16738554[2]

CGSC:100794


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2037

Plasmid clone

Shigen

PMID:16769691[5]

Status:Clone OK

Primer 1:GCCAGTAAACAACGAGTTTTTAT

Primer 2:CCgCCCCGAAAGCGGTCTTGATT

zef-3129::Tn10

Linked marker

CAG12099 = CGSC7397[3]

est. P1 cotransduction: 17% [6]
Synonyms:zee-3129::Tn10

zbd-3104::Tn10

Linked marker

CAG12021 = CGSC7344[3]

est. P1 cotransduction: 9% [6]
Synonyms:zbc-3105::Tn10, zbd-3105::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11788

EchoBASE (EcoliWiki Page)

EchoBASE:EB1736

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2052

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C2578

EcoGene (EcoliWiki Page)

EcoGene:EG11788

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:WCAG

ASAP (EcoliWikiPage)

ASAP:ABE-0006801


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
  4. ↑ Glasner, JD et al. (2003) ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 147-51 PubMed
  5. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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