cynS:Gene Product(s): Difference between revisions

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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0003677
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DNA binding
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR010982
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F
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Seeded from EcoCyc
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complete
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GO:0005737
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cytoplasm
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PMID:8083164
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IDA: Inferred from Direct Assay
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C
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Seeded from EcoCyc
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complete
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GO:0008152
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metabolic process
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR008076
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P
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Seeded from EcoCyc
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complete
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GO:0008824
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cyanate hydratase activity
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GO_REF:0000020<br />GO_REF:0000002<br />GO_REF:0000003<br />PMID:3651424
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IDA: Inferred from Direct Assay
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HAMAP:MF_00535<br />InterPro:IPR003712<br />EC:4.2.1.104<br />
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F
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Seeded from EcoCyc
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complete
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GO:0009439
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cyanate metabolic process
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GO_REF:0000020<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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HAMAP:MF_00535<br />InterPro:IPR003712
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P
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Seeded from EcoCyc
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complete
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GO:0009440
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cyanate catabolic process
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PMID:3309165
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IMP: Inferred from Mutant Phenotype
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P
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Seeded from EcoCyc
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complete
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GO:0016829
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lyase activity
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0456
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F
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Seeded from EcoCyc
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complete
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GO:0016836
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hydro-lyase activity
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR008076
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F
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Seeded from EcoCyc
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complete  
complete  

Revision as of 16:53, 5 October 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

CynS

Synonyms

cyanate aminohydrolase[1], B0340[2][1], Cnt[2][1], CyaN[2][1], CynS[2][1], cyanate hydrolase[2][1], cyanase[2][1], cyanate C-N-lyase[2][1]

Product description

cyanase[2][3];

Component of cyanase[2]; cyanase dimer[3]; cyanase[3]

Cyanate aminohydrolase[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0008824

cyanate hydratase activity

GO_REF:0000002
GO_REF:0000003
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR003712
EC:4.2.1.104
HAMAP:MF_00535

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0016836

hydro-lyase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008076

F

Seeded from EcoCyc [6]

complete

GO:0003677

DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010982

F

Seeded from EcoCyc [6]

complete

GO:0005737

cytoplasm

PMID:8083164[7]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [6]

complete

GO:0008824

cyanate hydratase activity

PMID:3651424[8]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0009440

cyanate catabolic process

PMID:3309165[9]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc [6]

complete

GO:0005737

cytoplasm

PMID:8083164[7]

IDA: Inferred from Direct Assay

C

Seeded from Riley et al 2006 [1].

complete

GO:0008152

metabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008076

P

Seeded from EcoCyc [6]

complete

GO:0009439

cyanate metabolic process

GO_REF:0000020
GO_REF:0000002

IEA: Inferred from Electronic Annotation

HAMAP:MF_00535
InterPro:IPR003712

P

Seeded from EcoCyc [6]

complete

GO:0016829

lyase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0456

F

Seeded from EcoCyc [6]

complete

GO:0009440

cyanate catabolic process

PMID:3309165[9]

P

Seeded from EcoCyc 11.1[3].

required field missing

GO:0006807

nitrogen compound metabolic process

P

Seeded from EcoCyc 10.6[2].

required fields missing

GO:0006805

xenobiotic metabolic process

P

Seeded from EcoCyc 10.6[2].

required fields missing

GO:0008824

cyanate hydratase activity

PMID:3651424[8]

F

Seeded from EcoCyc 11.1[3].

required field missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of cyanase

could be indirect

Protein

prs

PMID:16606699[10]

Experiment(s):EBI-1136296

Protein

dnaK

PMID:16606699[10]

Experiment(s):EBI-1136296

Protein

gshB

PMID:16606699[10]

Experiment(s):EBI-1136296

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MIQSQINRNI RLDLADAILL SKAKKDLSFA EIADGTGLAE AFVTAALLGQ QALPADAARL
VGAKLDLDED SILLLQMIPL RGCIDDRIPT DPTMYRFYEM LQVYGTTLKA LVHEKFGDGI
ISAINFKLDV KKVADPEGGE RAVITLDGKY LPTKPF
Length

156

Mol. Wt

17.049 kDa

pI

4.8 (calculated)

Extinction coefficient

5,960 - 6,085 (calc based on 4 Y, W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=cynS taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:CYANLY-MONOMER

UniProt (EcoliWiki Page)

UniProt:P00816

PFAM (EcoliWiki Page)

PFAM:PF02560

RefSeq (EcoliWiki Page)

RefSeq:NP_414874

ModBase (EcoliWiki Page)

ModBase:P00816

PDB (EcoliWiki Page)

PDB:1DW9


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  7. ↑ 7.0 7.1 Kozliak, EI et al. (1994) Expression of proteins encoded by the Escherichia coli cyn operon: carbon dioxide-enhanced degradation of carbonic anhydrase. J. Bacteriol. 176 5711-7 PubMed
  8. ↑ 8.0 8.1 Anderson, PM et al. (1987) Interaction of mono- and dianions with cyanase: evidence for apparent half-site binding. Biochemistry 26 3938-43 PubMed
  9. ↑ 9.0 9.1 Guilloton, M & Karst, F (1987) Isolation and characterization of Escherichia coli mutants lacking inducible cyanase. J. Gen. Microbiol. 133 645-53 PubMed
  10. ↑ 10.0 10.1 10.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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