Cis Element:Phage lambda ori: Difference between revisions
Table edited by Bmcintosh via TableEdit |
DanielRenfro (talk | contribs) |
||
| Line 173: | Line 173: | ||
<references/> | <references/> | ||
===Categories===[[Category:Phage lambda:Cis_Element]] | ===Categories=== | ||
[[Category:Phage lambda:Cis_Element]] | |||
Revision as of 21:53, 22 June 2009
Cis element summary table
| Standard Name |
Lambda ori |
|---|---|
| Synonyms | |
| Function |
Initiation control site for replication of the lambda genome |
| Location |
within O gene |
| SO terms |
|
| edit table |
Notes
Location and Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
Phage Lambda (NC_001416) |
NC_001416: 39034..39137 |
|||
| edit table |
Notes
- The lambda ori has 4 repeated segments located at the following coordinates[1]:
- ori1 - nt 39034 - 39051
- ori2 - nt 39054 - 39071
- ori3 - nt 39078 - 39095
- ori4 - nt 39101 - 39118
Below is the location of each of the ori repeats in the lambda genomic sequence (NC_001416)[1] :
Lambda nt39034 ATCCCTCAAA ACGAGGGAAA ATCCCCTAAAA CGAGGGATAA AACATCCCTC AAATTGGGGG A 39095
Lambda nt39096 TTGCTATCCC TCAAAACAGG GGGACACAAA AGACACTATT ACAAAAGAAA AAAGAAAA 39153
Interactions
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Phage lambda O protein |
Purified O protein protects lambda DNA in the ori region from ExoIII nuclease digestion (FIgure 2) and DNase cleavage (Figure 4). | ||
| edit table |
Notes
Mutant alleles and phenotypes
| Allele | Nt change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
| edit table |
Notes
Accessions
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
Notes
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 Moore, DD et al. () Sequence organization of the origins of DNA replication in lambdoid coliphages. Gene 14 91-101 PubMed
- ↑ Tsurimoto, T & Matsubara, K (1981) Purified bacteriophage lambda O protein binds to four repeating sequences at the lambda replication origin. Nucleic Acids Res. 9 1789-99 PubMed