recO:Gene Product(s): Difference between revisions

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GO:0005737
GO:0006974
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cytoplasm
response to DNA damage stimulus
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0227
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C
P
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Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
Seeded from EcoCyc
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required fields missing 
complete
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GO:0006974
GO:0005737
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response to DNA damage stimulus
cytoplasm
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0227
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P
C
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Seeded from EcoCyc
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
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complete
required fields missing 


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!align=left {{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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27.39 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
27.391 kDa
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!align=left {{table heading style}} |pI
!align=left {{table heading style}} |pI
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10.2 (calculated)
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!align=left {{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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24410 - 24660 (calc based on 9 Y, 2 W, and 2 C residues)  
24,410 - 24,660 (calc based on 9 Y, 2 W, and 2 C residues)


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Revision as of 21:44, 19 June 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RecO

Synonyms

gap repair protein[1], B2565[2][1], RecO[2][1]

Product description

protein interacts with RecR and possibly RecF proteins[2][3];

Component of RecFOR complex[2][3]

Conjugational recombination and repair; DNA-binding protein; RecA-like strand assimilation[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0006974

response to DNA damage stimulus

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0227

P

Seeded from EcoCyc [5]

complete

GO:0006310

DNA recombination

GO_REF:0000002
GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR003717
SP_KW:KW-0233
HAMAP:MF_00201

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0006281

DNA repair

GO_REF:0000002
GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR003717
SP_KW:KW-0234
HAMAP:MF_00201

P

Seeded from EcoCyc 12.5 [6]

complete

GO:0006281

DNA repair

GO_REF:0000020
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

HAMAP:MF_00201
InterPro:IPR003717
SP_KW:KW-0234

P

Seeded from EcoCyc

complete

GO:0006310

DNA recombination

GO_REF:0000020
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

HAMAP:MF_00201
InterPro:IPR003717
SP_KW:KW-0233

P

Seeded from EcoCyc

complete

GO:0006974

response to DNA damage stimulus

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0227

P

Seeded from EcoCyc

complete

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of RecFOR complex

could be indirect

Protein

rpsE

PMID:16606699[7]

Experiment(s):EBI-1143287

Protein

slt

PMID:16606699[7]

Experiment(s):EBI-1143287

Protein

era

PMID:16606699[7]

Experiment(s):EBI-1143287

Protein

aegA

PMID:16606699[7]

Experiment(s):EBI-1143287

Protein

secD

PMID:16606699[7]

Experiment(s):EBI-1143287

Protein

rplO

PMID:16606699[7]

Experiment(s):EBI-1143287

Protein

rpsC

PMID:16606699[7]

Experiment(s):EBI-1143287

Protein

rpsG

PMID:16606699[7]

Experiment(s):EBI-1143287

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MEGWQRAFVL HSRPWSETSL MLDVFTEESG RVRLVAKGAR SKRSTLKGAL QPFTPLLLRF
GGRGEVKTLR SAEAVSLALP LSGITLYSGL YINELLSRVL EYETRFSELF FDYLHCIQSL
AGVTGTPEPA LRRFELALLG HLGYGVNFTH CAGSGEPVDD TMTYRYREEK GFIASVVIDN
KTFTGRQLKA LNAREFPDAD TLRAAKRFTR MALKPYLGGK PLKSRELFRQ FMPKRTVKTH YE
Length

242

Mol. Wt

27.391 kDa

pI

10.2 (calculated)

Extinction coefficient

24,410 - 24,660 (calc based on 9 Y, 2 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
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<motif_map/>

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>recO 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10832-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0A7H3

PFAM (EcoliWiki Page)

PFAM:PF02565

RefSeq (EcoliWiki Page)

RefSeq:NP_417060


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Notes

Links

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Name URL Comments
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References

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  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed


Categories

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