flgK:Gene Product(s): Difference between revisions
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F | F | ||
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Seeded from EcoCyc | |||
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complete | |||
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GO:0005576 | |||
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extracellular region | |||
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GO_REF:0000004<br />GO_REF:0000023 | |||
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IEA: Inferred from Electronic Annotation | |||
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SP_KW:KW-0964<br />SP_SL:SL-0243 | |||
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C | |||
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Seeded from EcoCyc | Seeded from EcoCyc | ||
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GO: | GO:0009288 | ||
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flagellin-based flagellum | |||
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GO_REF:0000004<br />GO_REF:0000023 | GO_REF:0000002<br />GO_REF:0000004<br />GO_REF:0000023 | ||
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IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
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SP_KW:KW- | InterPro:IPR001444<br />SP_KW:KW-0975<br />SP_SL:SL-0307 | ||
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C | C | ||
Revision as of 00:24, 22 May 2009
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
FlgK |
|---|---|
| Synonyms |
flagellar hook-filament junction protein 1[1], B1082[2][1], FlaW[2][1], FlaS[2][1], FlgK[2][1] |
| Product description |
flagellar biosynthesis, hook-filament junction protein 1[2][3]; Flagellar synthesis, hook-associated protein[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0019861 |
flagellum |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc 12.5 [5] |
complete | |||
| GO:0009424 |
flagellin-based flagellum hook |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc [6] |
complete | |||
| GO:0009296 |
flagellum assembly |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [6] |
complete | |||
| GO:0009288 |
flagellin-based flagellum |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc 12.5 [5] |
complete | |||
| GO:0003774 |
motor activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [6] |
complete | |||
| GO:0005198 |
structural molecule activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [6] |
complete | |||
| GO:0001539 |
ciliary or flagellar motility |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [6] |
complete | |||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded from EcoCyc [6] |
complete | |||
| GO:0005576 |
extracellular region |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0964 |
C |
Seeded from EcoCyc [6] |
complete | ||
| GO:0001539 |
ciliary or flagellar motility |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc |
complete | |||
| GO:0003774 |
motor activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc |
complete | |||
| GO:0005198 |
structural molecule activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc |
complete | |||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded from EcoCyc |
complete | |||
| GO:0005576 |
extracellular region |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0964 |
C |
Seeded from EcoCyc |
complete | ||
| GO:0006457 |
protein folding |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0042330 |
taxis |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0009288 |
flagellin-based flagellum |
IEA: Inferred from Electronic Annotation |
InterPro:IPR001444 |
C |
Seeded from EcoCyc |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Subunits of Flagellum |
could be indirect |
||
|
Protein |
rpsB |
Experiment(s):EBI-1138791 | ||
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MSSLINNAMS GLNAAQAALN TASNNISSYN VAGYTRQTTI MAQANSTLGA GGWVGNGVYV SGVQREYDAF ITNQLRAAQT QSSGLTARYE QMSKIDNMLS TSTSSLATQM QDFFTSLQTL VSNAEDPAAR QALIGKSEGL VNQFKTTDQY LRDQDKQVNI AIGASVDQIN NYAKQIASLN DQISRLTGVG AGASPNNLLD QRDQLVSELN QIVGVEVSVQ DGGTYNITMA NGYSLVQGST ARQLAAVPSS ADPSRTTVAY VDGTAGNIEI PEKLLNTGSL GGILTFRSQD LDQTRNTLGQ LALAFAEAFN TQHKAGFDAN GDAGEDFFAI GKPAVLQNTK NKGDVAIGAT VTDASAVLAT DYKISFDNNQ WQVTRLASNT TFTVTPDANG KVAFDGLELT FTGTPAVNDS FTLKPVSDAI VNMDVLITDE AKIAMASEED AGDSDNRNGQ ALLDLQSNSK TVGGAKSFND AYASLVSDIG NKTATLKTSS ATQGNVVTQL SNQQQSISGV NLDEEYGNLQ RFQQYYLANA QVLQTANAIF DALINIR |
|---|---|
| Length |
547 |
| Mol. Wt |
57.93 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
33350 (calc based on 15 Y, 2 W, and 0 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
| Structures |
<beststructure>flgK 562</beststructure> |
|---|---|
| Models |
View models at: |
| edit table |
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
- ↑ 7.0 7.1 7.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
Categories
- GO:0019861 ! obsolete flagellum
- GO:0009424 ! bacterial-type flagellum hook
- GO:0009296 ! obsolete flagellum assembly
- GO:0009288 ! bacterial-type flagellum
- GO:0003774 ! motor activity
- GO:0005198 ! structural molecule activity
- GO:0001539 ! cilium or flagellum-dependent cell motility
- GO:0005515 ! protein binding
- GO:0005576 ! extracellular region
- GO:0006457 ! protein folding
- GO:0042330 ! taxis
- Proteins
- GO:0009296 ! flagellum biogenesis
- GO:0019861 ! flagellum
- Complex:Flagellum