prs:Gene Product(s): Difference between revisions

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Adding EcoGene Description
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InterPro:IPR000842<br />HAMAP:MF_00583
InterPro:IPR000842<br />HAMAP:MF_00583
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P
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
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GO:0009116
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nucleoside metabolic process
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR000836
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P
P
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required fields missing   
required fields missing   
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GO:0009116
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nucleoside metabolic process
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GO_REF:0000002
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IEA: Inferred from Electronic Annotation
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InterPro:IPR000836
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P
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete


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Revision as of 09:16, 12 March 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PrsA

Synonyms

phosphoribosylpyrophosphate synthase[1], B1207[2][1], DnaR[2][1], Prs[2][1], PrsA[2][1]

Product description

Phosphoribosylpyrophosphate synthase[3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0005515

protein binding

PMID:16606699[4]

IPI: Inferred from Physical Interaction

UniProtKB:P0A6F5

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0005515

protein binding

PMID:16606699[4]

IPI: Inferred from Physical Interaction

UniProtKB:P0A7D1

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0005515

protein binding

PMID:16606699[4]

IPI: Inferred from Physical Interaction

UniProtKB:P0A9Q1

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0005515

protein binding

PMID:16606699[4]

IPI: Inferred from Physical Interaction

UniProtKB:P0A9T6

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0005515

protein binding

PMID:16606699[4]

IPI: Inferred from Physical Interaction

UniProtKB:P0AF63

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0005515

protein binding

PMID:16606699[4]

IPI: Inferred from Physical Interaction

UniProtKB:P13458

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0005515

protein binding

PMID:16606699[4]

IPI: Inferred from Physical Interaction

UniProtKB:P36767

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0005515

protein binding

PMID:16606699[4]

IPI: Inferred from Physical Interaction

UniProtKB:P39176

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0005515

protein binding

PMID:16606699[4]

IPI: Inferred from Physical Interaction

UniProtKB:P60390

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0005515

protein binding

PMID:16606699[4]

IPI: Inferred from Physical Interaction

UniProtKB:Q47005

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0005515

protein binding

PMID:16606699[4]

IPI: Inferred from Physical Interaction

UniProtKB:Q47156

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0005737

cytoplasm

PMID:16858726[6]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc 12.5 [5]

complete

GO:0046872

metal ion binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0016740

transferase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0016301

kinase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0418

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0009165

nucleotide biosynthetic process

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR005946
SP_KW:KW-0545

P

Seeded from EcoCyc 12.5 [5]

complete

GO:0009156

ribonucleoside monophosphate biosynthetic process

GO_REF:0000002
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR000842
HAMAP:MF_00583

P

Seeded from EcoCyc 12.5 [5]

complete

GO:0005737

cytoplasm

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc 12.5 [5]

complete

GO:0004749

ribose phosphate diphosphokinase activity

GO_REF:0000002
GO_REF:0000002
GO_REF:0000003
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR000842
InterPro:IPR005946
EC:2.7.6.1
HAMAP:MF_00583

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0000287

magnesium ion binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR000842
InterPro:IPR005946
SP_KW:KW-0460
HAMAP:MF_00583

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0009152

purine ribonucleotide biosynthetic process

P

Seeded from EcoCyc 11.1[7].

required fields missing

GO:0009116

nucleoside metabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000836

P

Seeded from EcoCyc [8]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

npdA

PMID:15690043[9]

Experiment(s):EBI-880430, EBI-881344, EBI-885898

Protein

dnaJ

PMID:15690043[9]

Experiment(s):EBI-880430, EBI-885898

Protein

dnaK

PMID:15690043[9]

Experiment(s):EBI-880430

Protein

groL

PMID:15690043[9]

Experiment(s):EBI-880430, EBI-885898

Protein

mreB

PMID:15690043[9]

Experiment(s):EBI-880430

Protein

rplB

PMID:15690043[9]

Experiment(s):EBI-880430, EBI-885898

Protein

rplE

PMID:15690043[9]

Experiment(s):EBI-880430

Protein

rplJ

PMID:15690043[9]

Experiment(s):EBI-880430

Protein

rplP

PMID:15690043[9]

Experiment(s):EBI-880430, EBI-885898

Protein

rpsB

PMID:15690043[9]

Experiment(s):EBI-880430, EBI-885898

Protein

rpsC

PMID:15690043[9]

Experiment(s):EBI-880430, EBI-885898

Protein

rpsD

PMID:15690043[9]

Experiment(s):EBI-880430, EBI-885898

Protein

rpsG

PMID:15690043[9]

Experiment(s):EBI-880430, EBI-885898

Protein

tufA

PMID:15690043[9]

Experiment(s):EBI-880430, EBI-885898

Protein

rluB

PMID:15690043[9]

Experiment(s):EBI-880430

Protein

yibA

PMID:15690043[9]

Experiment(s):EBI-880430

Protein

nusG

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rho

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rplC

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rplD

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rplI

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rplK

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rplL

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rplM

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rplN

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rplO

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rplS

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rplU

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rplV

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rplW

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rplX

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rpmB

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rpsE

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rpsH

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rpsJ

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rpsP

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

rpsT

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

yfiF

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

yrfD

PMID:15690043[9]

Experiment(s):EBI-885898

Protein

groL

PMID:16606699[4]

Experiment(s):EBI-1139177

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MPDMKLFAGN ATPELAQRIA NRLYTSLGDA AVGRFSDGEV SVQINENVRG GDIFIIQSTC
APTNDNLMEL VVMVDALRRA SAGRITAVIP YFGYARQDRR VRSARVPITA KVVADFLSSV
GVDRVLTVDL HAEQIQGFFD VPVDNVFGSP ILLEDMLQLN LDNPIVVSPD IGGVVRARAI
AKLLNDTDMA IIDKRRPRAN VSQVMHIIGD VAGRDCVLVD DMIDTGGTLC KAAEALKERG
AKRVFAYATH PIFSGNAANN LRNSVIDEVV VCDTIPLSDE IKSLPNVRTL TLSGMLAEAI
RRISNEESIS AMFEH
Mol. Wt

34.22 kDa (calc) [2]

pI

5.52[2]

Extinction coefficient

5960 - 6460 (calc based on 4 Y, 0 W, and 4 C residues)

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Domains/Motifs/Modification Sites See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
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Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>prs 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:PRPPSYN-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P0A717

UniProt (EcoliWiki Page)

UniProt:P0A717

PFAM (EcoliWiki Page)

PFAM:PF00156

RefSeq (EcoliWiki Page)

RefSeq:NP_415725


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Notes

Links

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Name URL Comments
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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  4. ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 4.11 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  6. ↑ Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
  7. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  8. ↑ EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  9. ↑ 9.00 9.01 9.02 9.03 9.04 9.05 9.06 9.07 9.08 9.09 9.10 9.11 9.12 9.13 9.14 9.15 9.16 9.17 9.18 9.19 9.20 9.21 9.22 9.23 9.24 9.25 9.26 9.27 9.28 9.29 9.30 9.31 9.32 9.33 9.34 9.35 9.36 9.37 9.38 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed


Categories

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