recO:Gene Product(s): Difference between revisions

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===Notes===
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<big>'''Gene Ontology'''</big><br />{{Product_GO_help}}<!--box uid=421aa90e079fa326b6494f812ad13e79.25423.O46aab015e6df6-->
<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.25423.O46aab015e6df6-->
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[[Category:GO:0006974_!_response_to_DNA_damage_stimulus]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006974_!_response_to_DNA_damage_stimulus GO:0006974]
GO:0006974
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response to DNA damage stimulus
response to DNA damage stimulus
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
GO_REF:0000004
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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[http://www.uniprot.org/keywords/KW-0227 SP_KW:KW-0227]
SP_KW:KW-0227
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P
P
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[[Category:GO:0006310_!_DNA_recombination]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006310_!_DNA_recombination GO:0006310]
GO:0006310
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DNA recombination
DNA recombination
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000020 GO_REF:0000020]
GO_REF:0000002<br />GO_REF:0000004<br />GO_REF:0000020
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR003717 InterPro:IPR003717]<br />[http://www.uniprot.org/keywords/KW-0233 SP_KW:KW-0233]<br />[http://ca.expasy.org/unirule/MF_00201 HAMAP:MF_00201]
InterPro:IPR003717<br />SP_KW:KW-0233<br />HAMAP:MF_00201
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P
P
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[[Category:GO:0006281_!_DNA_repair]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006281_!_DNA_repair GO:0006281]
GO:0006281
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DNA repair
DNA repair
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000020 GO_REF:0000020]
GO_REF:0000002<br />GO_REF:0000004<br />GO_REF:0000020
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR003717 InterPro:IPR003717]<br />[http://www.uniprot.org/keywords/KW-0234 SP_KW:KW-0234]<br />[http://ca.expasy.org/unirule/MF_00201 HAMAP:MF_00201]
InterPro:IPR003717<br />SP_KW:KW-0234<br />HAMAP:MF_00201
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P
P
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[[Category:GO:0005737_!_cytoplasm]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005737_!_cytoplasm GO:0005737]
GO:0005737  
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cytoplasm  
cytoplasm  
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Protein
Protein
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[http://www.uniprot.org/uniprot/Subuni Subuni]ts of [[:Category:Complex:RecFOR complex|RecFOR complex]]  
Subunits of [[:Category:Complex:RecFOR complex|RecFOR complex]]  
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could be indirect  
could be indirect  
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Protein
Protein
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[[rpsE:Gene_Product(s)|rpsE]]<br />
rpsE<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />  
PMID:16606699
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Experiment(s):EBI-1143287<br />  
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Protein
Protein
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[[slt:Gene_Product(s)|slt]]<br />
slt<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />  
PMID:16606699
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Experiment(s):EBI-1143287<br />  
|-  
|-  
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Protein
Protein
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[[era:Gene_Product(s)|era]]<br />
era<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />  
PMID:16606699
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Experiment(s):EBI-1143287<br />  
|-  
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Protein
Protein
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[[aegA:Gene_Product(s)|aegA]]<br />
aegA<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />  
PMID:16606699
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Experiment(s):EBI-1143287<br />  
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Protein
Protein
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[[secD:Gene_Product(s)|secD]]<br />
secD<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />  
PMID:16606699
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Experiment(s):EBI-1143287<br />  
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Protein
Protein
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[[rplO:Gene_Product(s)|rplO]]<br />
rplO<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />  
PMID:16606699
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Experiment(s):EBI-1143287<br />  
|-  
|-  
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Protein
Protein
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[[rpsC:Gene_Product(s)|rpsC]]<br />
rpsC<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />  
PMID:16606699
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Experiment(s):EBI-1143287<br />  
|-  
|-  
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Protein
Protein
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[[rpsG:Gene_Product(s)|rpsG]]<br />
rpsG<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1143287 EBI-1143287]<br />  
PMID:16606699
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Experiment(s):EBI-1143287<br />  


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<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
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<span id="Structure"></span><big>'''Structure'''</big>
<span id="Structure"></span><big>'''Structure'''</big>
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==References==
==References==
{{BacktoTop}}
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{{RefHelp}}
 
<references/>
<references/>
__NOTOC__
__NOTOC__

Revision as of 22:13, 16 February 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RecO

Synonyms

gap repair protein[1], B2565[2][1], RecO[2][1]

Product description

protein interacts with RecR and possibly RecF proteins[2][3];

Component of RecFOR complex[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0006974

response to DNA damage stimulus

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0227

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006310

DNA recombination

GO_REF:0000002
GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR003717
SP_KW:KW-0233
HAMAP:MF_00201

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006281

DNA repair

GO_REF:0000002
GO_REF:0000004
GO_REF:0000020

IEA: Inferred from Electronic Annotation

InterPro:IPR003717
SP_KW:KW-0234
HAMAP:MF_00201

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of RecFOR complex

could be indirect

Protein

rpsE

PMID:16606699[5]

Experiment(s):EBI-1143287

Protein

slt

PMID:16606699[5]

Experiment(s):EBI-1143287

Protein

era

PMID:16606699[5]

Experiment(s):EBI-1143287

Protein

aegA

PMID:16606699[5]

Experiment(s):EBI-1143287

Protein

secD

PMID:16606699[5]

Experiment(s):EBI-1143287

Protein

rplO

PMID:16606699[5]

Experiment(s):EBI-1143287

Protein

rpsC

PMID:16606699[5]

Experiment(s):EBI-1143287

Protein

rpsG

PMID:16606699[5]

Experiment(s):EBI-1143287

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MEGWQRAFVL HSRPWSETSL MLDVFTEESG RVRLVAKGAR SKRSTLKGAL QPFTPLLLRF
GGRGEVKTLR SAEAVSLALP LSGITLYSGL YINELLSRVL EYETRFSELF FDYLHCIQSL
AGVTGTPEPA LRRFELALLG HLGYGVNFTH CAGSGEPVDD TMTYRYREEK GFIASVVIDN
KTFTGRQLKA LNAREFPDAD TLRAAKRFTR MALKPYLGGK PLKSRELFRQ FMPKRTVKTH YE
Mol. Wt

27.39 kDa (calc) [2]

pI
Extinction coefficient

24410 - 24660 (calc based on 9 Y, 2 W, and 2 C residues)

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Domains/Motifs/Modification Sites See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
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Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>recO 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10832-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0A7H3

PFAM (EcoliWiki Page)

PFAM:PF02565

RefSeq (EcoliWiki Page)

RefSeq:NP_417060


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Notes

Links

[back to top]


Name URL Comments
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References

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  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed


Categories

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