cynS:Gene Product(s): Difference between revisions

Standard name	CynS
Synonyms	cyanate aminohydrolase^[1], B0340^[2]^[1], Cnt^[2]^[1], CyaN^[2]^[1], CynS^[2]^[1], cyanate hydrolase^[2]^[1], cyanase^[2]^[1], cyanate C-N-lyase^[2]^[1]
Product description	cyanase^[2]^[3]; Component of cyanase^[2]; cyanase dimer^[3]; cyanase^[3]
EC number (for enzymes)	4.2.1.104^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0008824	cyanate hydratase activity	GO_REF:0000002 GO_REF:0000003 GO_REF:0000020	IEA: Inferred from Electronic Annotation	InterPro:IPR003712 EC:4.2.1.104 HAMAP:MF_00535	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0016836	hydro-lyase activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008076	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0003677	DNA binding	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR010982	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0005737	cytoplasm	PMID:8083164^[5]	IDA: Inferred from Direct Assay		C	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0008824	cyanate hydratase activity	PMID:3651424^[6]	IDA: Inferred from Direct Assay		F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0009440	cyanate catabolic process	PMID:3309165^[7]	IMP: Inferred from Mutant Phenotype		P	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0005737	cytoplasm	PMID:8083164^[5]	IDA: Inferred from Direct Assay		C	Seeded from Riley et al 2006 ^[1].	complete
	GO:0009440	cyanate catabolic process	PMID:3309165^[7]			P	Seeded from EcoCyc 11.1^[3].	required field missing
	GO:0006807	nitrogen compound metabolic process				P	Seeded from EcoCyc 10.6^[2].	required fields missing
	GO:0006805	xenobiotic metabolic process				P	Seeded from EcoCyc 10.6^[2].	required fields missing
	GO:0008824	cyanate hydratase activity	PMID:3651424^[6]			F	Seeded from EcoCyc 11.1^[3].	required field missing
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of cyanase	could be indirect
Protein	prs		PMID:16606699^[8]	Experiment(s):EBI-1136296
Protein	dnaK		PMID:16606699^[8]	Experiment(s):EBI-1136296
Protein	gshB		PMID:16606699^[8]	Experiment(s):EBI-1136296
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence	at EcoCyc MIQSQINRNI RLDLADAILL SKAKKDLSFA EIADGTGLAE AFVTAALLGQ QALPADAARL VGAKLDLDED SILLLQMIPL RGCIDDRIPT DPTMYRFYEM LQVYGTTLKA LVHEKFGDGI ISAINFKLDV KKVADPEGGE RAVITLDGKY LPTKPF
Mol. Wt	17.05 kDa (calc) ^[2]
pI	5.29^[2]
Extinction coefficient	5960 - 6085 (calc based on 4 Y, 0 W, and 1 C residues)
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Domains/Motifs/Modification Sites See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes
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Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:CYANLY-MONOMER
UniProt (EcoliWiki Page)	UniProt:P00816
PFAM (EcoliWiki Page)	PFAM:PF02560
RefSeq (EcoliWiki Page)	RefSeq:NP_414874
ModBase (EcoliWiki Page)	ModBase:P00816
PDB (EcoliWiki Page)	PDB:1DW9
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 ^2.11 ^2.12 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 ^4.3 ^4.4 ^4.5 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^5.0 ^5.1 Kozliak, EI et al. (1994) Expression of proteins encoded by the Escherichia coli cyn operon: carbon dioxide-enhanced degradation of carbonic anhydrase. J. Bacteriol. 176 5711-7 PubMed
↑ ^6.0 ^6.1 Anderson, PM et al. (1987) Interaction of mono- and dianions with cyanase: evidence for apparent half-site binding. Biochemistry 26 3938-43 PubMed
↑ ^7.0 ^7.1 Guilloton, M & Karst, F (1987) Isolation and characterization of Escherichia coli mutants lacking inducible cyanase. J. Gen. Microbiol. 133 645-53 PubMed
↑ ^8.0 ^8.1 ^8.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

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 Protein
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-[http://www.uniprot.org/uniprot/Subuni Subuni]ts of [[:Category:Complex:cyanase|cyanase]]
+Subunits of [[:Category:Complex:cyanase|cyanase]]
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 could be indirect
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 Protein
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-[[prs:Gene_Product(s)|prs]]<br />
+prs<br />
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 |[[PMID:16606699]]<ref name=PMID:16606699/>
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-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1136296 EBI-1136296]<br />
+Experiment(s):EBI-1136296<br />
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 Protein
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-[[dnaK:Gene_Product(s)|dnaK]]<br />
+dnaK<br />
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-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1136296 EBI-1136296]<br />
+Experiment(s):EBI-1136296<br />
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 Protein
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-[[gshB:Gene_Product(s)|gshB]]<br />
+gshB<br />
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 |[[PMID:16606699]]<ref name=PMID:16606699/>
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-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1136296 EBI-1136296]<br />
+Experiment(s):EBI-1136296<br />
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 ==References==
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cynS:Gene Product(s): Difference between revisions

Revision as of 23:12, 9 February 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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cynS:Gene Product(s): Difference between revisions

Revision as of 23:12, 9 February 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

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