lacZ:Expression: Difference between revisions

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!Transcription unit(s)
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[[:Category:Txn_unit:lacZYA|lacZYA]]  
[[:Category:Txn_unit:lacZYA|lacZYA]]  
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===Notes===
===Notes===
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!Allele Name!!Mutation!!Phenotype!!Reference
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<big>'''Expression Studies'''</big>
<big>'''Expression Studies'''</big>
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microarray  
microarray
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[http://genexpdb.ou.edu/index.php?query=b0344 GenExpDB:b0344] ([[EcoliGenExpDB|EcoliWiki Page]])  
[[geoprofiles:b0344|GEO Profiles:b0344]] ([[Gene_Expression_Omnibus_%28GEO%29|EcoliWiki Page]])
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Summary of data for lacZ from multiple microarray studies 
NCBI GEO profiles for ''lacZ''
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microarray
microarray  
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[[geoprofiles:b0344|GEO Profiles:b0344]] ([[Gene_Expression_Omnibus_%28GEO%29|EcoliWiki Page]])
[http://genexpdb.ou.edu/index.php?query=b0344 GenExpDB:b0344] ([[EcoliGenExpDB|EcoliWiki Page]])  
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NCBI GEO profiles for ''lacZ''
Summary of data for lacZ from multiple microarray studies 


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<big>'''Expression Resources'''</big>
<big>'''Expression Resources'''</big>
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[http://www.openbiosystems.com/GeneExpression/Non-Mammalian/Bacteria/EcoliPromoters/ OpenBioSystems][[Category:Genes in OpenBioSystems with Promoter Fusions]]
[http://www.openbiosystems.com/GeneExpression/Non-Mammalian/Bacteria/EcoliPromoters/ OpenBioSystems][[Category:Genes in OpenBioSystems with Promoter Fusions]]
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GFP fusion described in Zaslaver, <i>et al.</i><br />Plate:109-AZ01..109-AZ20; Well:H1<ref name="PMID:16862137" /><Br />Each of the plates in the experiment contained a well with a lacZ fusion for normalization.
Raw protomer fusion data from Zaslaver, <i>et al.</i><br />Plate:109-AZ01..109-AZ20; Well:H1<ref name="PMID:16862137" /><Br />Each of the plates in the experiment contained a well with a lacZ fusion for normalization.
   
   


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<protect><!--Expression_experimental_notes--></protect>
<protect><!--Expression_experimental_notes--></protect>
===Notes===
===Notes===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10527 EcoCyc:EG10527]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10527 EcoCyc:EG10527]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0522 EchoBASE:EB0522]
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0522 EchoBASE:EB0522]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
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[http://genexpdb.ou.edu/index.php?query=b0344 GenExpDB:b0344]
[http://chase.ou.edu/macro/searchlink.php?bnum=b0344 EcoliGenExpDB:b0344]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
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[http://ecogene.org/geneinfo.php?eg_id=EG10527 EcoGene:EG10527]
[http://ecogene.org/geneinfo.php?eg_id=EG10527 EcoGene:EG10527]
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__NOTOC__
__NOTOC__

Revision as of 04:06, 6 February 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

lacZYA

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Figure courtesy of RegulonDB


Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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gbrowse_img.php?coord=365509..365549&genome=ecoli&name=MG1655&trackset=Genes_unlabeled+DNA_unlabeled+flip&width=400&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0344 (EcoliWiki Page)

NCBI GEO profiles for lacZ

microarray

GenExpDB:b0344 (EcoliWiki Page)

Summary of data for lacZ from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (365438..365669) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ02, 109-AZ20; Well:C8[1]

GFP Fusion

Intergenic region (365438..365669) fused to gfpmut2.

OpenBioSystems

Raw protomer fusion data from Zaslaver, et al.
Plate:109-AZ01..109-AZ20; Well:H1[1]
Each of the plates in the experiment contained a well with a lacZ fusion for normalization.


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<protect>

Notes

Accessions Related to lacZ Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10527

EchoBASE (EcoliWiki Page)

EchoBASE:EB0522

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0344

EcoGene (EcoliWiki Page)

EcoGene:EG10527


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Notes

Links

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Name URL Comments
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References

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  1. ↑ 1.0 1.1 Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed


Categories

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