rhaS:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
imported>Wikientrybot
No edit summary
imported>Wikientrybot
Move help links into the <above> tag inside templates.
Line 50: Line 50:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.V46aa01e7f2de7-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.V46aa01e7f2de7-->
{{Gene_nomenclature_help}}
 
<!--Nomenclature_notes--></protect>
<!--Nomenclature_notes--></protect>
===Notes===
===Notes===
Line 98: Line 98:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.Q46aa01e8818f2-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.Q46aa01e8818f2-->
{{Gene_location_help}}
 
<!--Location_notes--></protect>
<!--Location_notes--></protect>
===Notes===
===Notes===
Line 120: Line 120:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.Y46aa01e94729b-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.Y46aa01e94729b-->
{{Gene_sequence_features_help}}
 
<protect><!--Sequence_notes--></protect>
<protect><!--Sequence_notes--></protect>
====Notes====
====Notes====
Line 175: Line 175:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.Q46aa01e991a35-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.Q46aa01e991a35-->
{{Gene_alleles_help}}
 
<protect><!--Alleles_notes--></protect>
<protect><!--Alleles_notes--></protect>
===Notes===
===Notes===
Line 230: Line 230:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.A46aa01ea56e0f-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.A46aa01ea56e0f-->
{{Gene_resources_help}}
 
<protect><!--Gene_resources_notes--></protect>
<protect><!--Gene_resources_notes--></protect>
===Notes===
===Notes===
Line 308: Line 308:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.X46aa01eb0315f-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.X46aa01eb0315f-->
{{Gene_accessions_help}}
 
<protect><!--Gene_accessions_notes--></protect>
<protect><!--Gene_accessions_notes--></protect>
===Notes===
===Notes===
Line 330: Line 330:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.P46a71b915203d-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.18371.P46a71b915203d-->
{{Links_help}}
 


<noinclude><protect>
<noinclude><protect>
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
<references/>
__NOTOC__
__NOTOC__

Revision as of 02:57, 6 February 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rhaS

Mnemonic
Synonyms

ECK3898, b3905, JW3876, rhaC, rhaC2[1]

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

88.28 minutes 

MG1655: 4095759..4096595
gbrowse_img.php?coord=4094759..4097595&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 3538945..3538109
gbrowse_img.php?coord=3537109..3539945&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

edit table


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔrhaS (Keio:JW3876)

deletion

deletion

PMID:16738554[2]

Shigen

xx

xx

xx

Growth Phenotype

xx


edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3876

Plasmid clone

Shigen

PMID:16769691[3]

Status:Clone OK

Primer 1:GCCACCGTATTACATAGTGTGGA

Primer 2:CCTTGCAGAAAGCCATCCCGTCC

zih-35::Tn10

Linked marker

CAG18495 = CGSC7467[4]

est. P1 cotransduction: 29% [5]

pflD501::Tn10

Linked marker

CAG18477 = CGSC7470[4]

est. P1 cotransduction: 12% [5]
Synonyms:zij-501::Tn10 nnnCAG18477 also carries metF79(Am) (CGSC).

edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10843

EchoBASE (EcoliWiki Page)

EchoBASE:EB0836

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3905

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C4855

EcoGene (EcoliWiki Page)

EcoGene:EG10843

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:RHAS

CGSC (EcoliWiki Page)

CGSC:17950

ASAP (EcoliWikiPage)

ASAP:ABE-0012745


edit table


Notes

Links

[back to top]


Name URL Comments
edit table


References

[back to top]


  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  4. ↑ 4.0 4.1 CGSC: The Coli Genetics Stock Center
  5. ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).


Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=rhaS:Gene&oldid=688917"