sucA:Gene Product(s): Difference between revisions
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-880717 EBI-880717], [http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-880739 EBI-880739], [http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-886788 EBI-886788]<br /> | Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-880717 EBI-880717], [http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-880739 EBI-880739], [http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-886788 EBI-886788]<br /> | ||
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Protein | |||
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[[groL:Gene_Product(s)|groL]]<br /> | |||
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|[[PMID:16606699]]<ref name=PMID:16606699/> | |||
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1137802 EBI-1137802]<br /> | |||
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Protein | Protein | ||
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[[ | [[dnaE:Gene_Product(s)|dnaE]]<br /> | ||
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Revision as of 22:49, 5 February 2009
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
SucA |
|---|---|
| Synonyms |
2-oxoglutarate decarboxylase, thiamin-requiring[1] |
| Product description |
|
| EC number (for enzymes) | |
| edit table |
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0030976 |
thiamin pyrophosphate binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [2] |
complete | |||
| GO:0016624 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [2] |
complete | |||
| GO:0016491 |
oxidoreductase activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [2] |
complete | |||
| GO:0008152 |
metabolic process |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [2] |
complete | |||
| GO:0006096 |
glycolysis |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [2] |
complete | |||
| GO:0004591 |
oxoglutarate dehydrogenase (succinyl-transferring) activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [2] |
complete | |||
| GO:0005737 |
cytoplasm |
C |
Seeded from Riley et al 2006 [1]. |
required fields missing | ||||
| GO:0006099 |
tricarboxylic acid cycle |
PMID:13152052[3] |
IDA: Inferred from Direct Assay |
P |
Seeded from Riley et al 2006 [1]. |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
PMID:15690043[4] |
Experiment(s):EBI-880717 | ||
|
Protein |
PMID:15690043[4] |
Experiment(s):EBI-880717 | ||
|
Protein |
PMID:15690043[4] |
Experiment(s):EBI-880717, EBI-886788 | ||
|
Protein |
PMID:15690043[4] |
Experiment(s):EBI-880717, EBI-880739, EBI-886788 | ||
|
Protein |
PMID:16606699[5] |
Experiment(s):EBI-1137802 | ||
|
Small Molecule |
TTTPP |
selectively inhibits pyruvate or 2-oxoglutarate dehydrogenase (El). |
||
|
Protein |
PMID:16606699[5] |
Experiment(s):EBI-1137802 | ||
| edit table |
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence | |
|---|---|
| Mol. Wt | |
| pI | |
| Extinction coefficient |
|
| edit table |
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
| Type | Residues | Description | Notes |
|---|---|---|---|
| edit table |
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
| Structures |
<beststructure>sucA 562</beststructure> |
|---|---|
| Models |
View models at: |
| edit table |
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ SWIM, HE & KRAMPITZ, LO (1954) Acetic acid oxidation by Escherichia coli; evidence for the occurrence of a tricarboxylic acid cycle. J. Bacteriol. 67 419-25 PubMed
- ↑ 4.0 4.1 4.2 4.3 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
- ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
Categories
- GO:0030976 ! thiamin pyrophosphate binding
- GO:0016624 ! oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
- GO:0016491 ! oxidoreductase activity
- GO:0008152 ! metabolic process
- GO:0006096 ! glycolysis
- GO:0004591 ! oxoglutarate dehydrogenase (succinyl-transferring) activity
- GO:0005737 ! cytoplasm
- GO:0006099 ! tricarboxylic acid cycle
- Proteins