recE:Gene Product(s): Difference between revisions

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[[mreB:Gene_Product(s)|mreB]]<br />
[[mreB:Gene_Product(s)|mreB]]<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1139608 EBI-1139608]<br />
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Protein
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[[recG:Gene_Product(s)|recG]]<br />
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Revision as of 20:22, 5 February 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

RecE

RecE

Synonyms

Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease[1], B1350[2][1], RmuB[2][1], Rac[2][1], SbcA[2][1], RecE[2][1]

Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease[1], B1350[2][1], RmuB[2][1], Rac[2][1], SbcA[2][1], RecE[2][1]

Product description

exonuclease VIII, ds DNA exonuclease, 5' --> 3' specific[2][3]

exonuclease VIII, ds DNA exonuclease, 5' --> 3' specific[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki. See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016787

hydrolase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0004527

exonuclease activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0269

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0004518

nuclease activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0540

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0006308

DNA catabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0006281

DNA repair

P

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

aceE

 PMID:15690043[5]

Experiment(s):EBI-882168

Protein

ligA

 PMID:15690043[5]

Experiment(s):EBI-882168, EBI-883824

Protein

rpsB

 PMID:16606699[6]

Experiment(s):EBI-1139608

Protein

mreB

 PMID:16606699[6]

Experiment(s):EBI-1139608

Protein

recG

 PMID:16606699[6]

Experiment(s):EBI-1139608

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Notes

Localization

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Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MSTKPLFLLR KAKKSSGEPD VVLWASNDFE STCATLDYLI VKSGKKLSSY FKAVATNFPV
VNDLPAEGEI DFTWSERYQL SKDSMTWELK PGAAPDNAHY QGNTNVNGED MTEIEENMLL
PISGQELPIR WLAQHGSEKP VTHVSRDGLQ ALHIARAEEL PAVTALAVSH KTSLLDPLEI
RELHKLVRDT DKVFPNPGNS NLGLITAFFE AYLNADYTDR GLLTKEWMKG NRVSHITRTA
SGANAGGGNL TDRGEGFVHD LTSLARDVAT GVLARSMDLD IYNLHPAHAK RIEEIIAENK
PPFSVFRDKF ITMPGGLDYS RAIVVASVKE APIGIEVIPA HVTEYLNKVL TETDHANPDP
EIVDIACGRS SAPMPQRVTE EGKQDDEEKP QPSGTTAVEQ GEAETMEPDA TEHHQDTQPL
DAQSQVNSVD AKYQELRAEL HEARKNIPSK NPVDDDKLLA ASRGEFVDGI SDPNDPKWVK
GIQTRDCVYQ NQPETEKTSP DMNQPEPVVQ QEPEIACNAC GQTGGDNCPD CGAVMGDATY
QETFDEESQV EAKENDPEEM EGAEHPHNEN AGSDPHRDCS DETGEVADPV IVEDIEPGIY
YGISNENYHA GPGISKSQLD DIADTPALYL WRKNAPVDTT KTKTLDLGTA FHCRVLEPEE
FSNRFIVAPE FNRRTNAGKE EEKAFLMECA STGKTVITAE EGRKIELMYQ SVMALPLGQW
LVESAGHAES SIYWEDPETG ILCRCRPDKI IPEFHWIMDV KTTADIQRFK TAYYDYRYHV
QDAFYSDGYE AQFGVQPTFV FLVASTTIEC GRYPVEIFMM GEEAKLAGQQ EYHRNLRTLS
DCLNTDEWPA IKTLSLPRWA KEYAND
Mol. Wt

96.37 kDa (calc) [2]

pI
Extinction coefficient

106230 - 107980 (calc based on 27 Y, 12 W, and 14 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes
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Structure

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Structures

<beststructure>recE 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10827-MONOMER

UniProt (EcoliWiki Page)

UniProt:P15032

PFAM (EcoliWiki Page)

PFAM:PF06630

RefSeq (EcoliWiki Page)

RefSeq:NP_415866


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Notes

Links

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Name URL Comments
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References

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  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ 5.0 5.1 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.0 6.1 6.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed


Categories

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