cyoC:Gene Product(s): Difference between revisions

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P
P
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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complete
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[[Category:GO:0009055_!_electron_carrier_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009055_!_electron_carrier_activity GO:0009055]
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electron carrier activity
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[[PMID:3301837]]<ref name=PMID:3301837/>
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IDA: Inferred from Direct Assay
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F
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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[[Category:GO:0009055_!_electron_carrier_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009055_!_electron_carrier_activity GO:0009055]
[[Category:GO:0009060_!_aerobic_respiration]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009060_!_aerobic_respiration GO:0009060]
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electron carrier activity
aerobic respiration
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[[PMID:3301837]]<ref name=PMID:3301837/>
[[PMID:2981797]]<ref name=PMID:2981797/>
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IDA: Inferred from Direct Assay
IMP: Inferred from Mutant Phenotype
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F
P
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>

Revision as of 19:56, 2 October 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

CyoC product

Synonyms

cytochrome o ubiquinol oxidase subunit III product[1], B0430 product[2][1], CyoC product[2][1]

Product description

cytochrome bo terminal oxidase subunit III[2][3];

Component of ; [[:Category:Complex:cytochrome bo terminal oxidase|cytochrome bo terminal oxidase]][2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0006810

transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0009055

electron carrier activity

PMID:3301837[5]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0009054

electron acceptor activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0009060

aerobic respiration

PMID:2981797[6]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc 12.5 [4]

complete

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Interactions

Partner Type Partner Notes

Protein

Subunits of [[:Category:Complex:cytochrome bo terminal oxidase|cytochrome bo terminal oxidase]]

could be indirect

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Notes

Localization

Compartment Description Evidence Notes

plasma membrane

C-terminus localized to the periplasm with 5 predicted transmembrane domains

Daley et al. (2005) [7]


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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MATDTLTHAT AHAHEHGHHD AGGTKIFGFW IYLMSDCILF SILFATYAVL VNGTAGGPTG
KDIFELPFVL VETFLLLFSS ITYGMAAIAM YKNNKSQVIS WLALTWLFGA GFIGMEIYEF
HHLIVNGMGP DRSGFLSAFF ALVGTHGLHV TSGLIWMAVL MVQIARRGLT STNRTRIMCL
SLFWHFLDVV WICVFTVVYL MGAM
Mol. Wt

22.62 kDa (calc) [2]

pI

7.03[2]

Extinction coefficient

41940 - 42315 (calc based on 6 Y, 6 W, and 3 C residues)

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Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structure Type Organism Accession Residues covered Notes

X-RAY DIFFRACTION

Escherichia coli

1FFT The structure of ubiquinol oxidase from Escherichia coli

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:CYOC-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0ABJ3

PFAM (EcoliWiki Page)

PFAM:PF00510

RefSeq (EcoliWiki Page)

RefSeq:NP_414964

ModBase (EcoliWiki Page)

ModBase:P0ABJ3

PDB (EcoliWiki Page)

PDB:1FFT

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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ Lorence, RM et al. (1987) Cytochrome b558 monitors the steady state redox state of the ubiquinone pool in the aerobic respiratory chain of Escherichia coli. J. Biol. Chem. 262 10532-6 PubMed
  6. ↑ Au, DC et al. (1985) Isolation and characterization of an Escherichia coli mutant lacking the cytochrome o terminal oxidase. J. Bacteriol. 161 123-7 PubMed
  7. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed


Categories

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[[Category:Complex:cytochrome bo terminal oxidase]]

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