hrpB:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
edited by 127.0.0.1 via TableEdit
Edited by wikibot
Line 45: Line 45:
''ECK0147, b0148, JW0144, yadO''<ref name='LIB:Riley_2006'/>
''ECK0147, b0148, JW0144, yadO''<ref name='LIB:Riley_2006'/>
|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10871.G46a9a98212287&page=10871&pagename={{FULLPAGENAMEE}} edit table]
|colspan='2'|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10871.G46a9a98212287&page=10871&pagename={{FULLPAGENAMEE}} edit table]
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.10871.G46a9a98212287-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.10871.G46a9a98212287-->
Line 92: Line 92:
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:162105..164534&plugin_action=Go FASTA Dump]  
*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/ecoli_W3110/?plugin=FastaDumper&name=W3110:162105..164534&plugin_action=Go FASTA Dump]  
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10871.F46a9a9828a70d&page=10871&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10871.F46a9a9828a70d&page=10871&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.10871.F46a9a9828a70d-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.10871.F46a9a9828a70d-->
Line 113: Line 113:
!Feature type!!Location!!Description
!Feature type!!Location!!Description
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10871.N46a9a98332fb7&page=10871&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10871.N46a9a98332fb7&page=10871&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.10871.N46a9a98332fb7-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.10871.N46a9a98332fb7-->
Line 151: Line 151:
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10871.P46a9a983737eb&page=10871&pagename={{FULLPAGENAMEE}} edit table] || || || || || || ||
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10871.P46a9a983737eb&page=10871&pagename={{FULLPAGENAMEE}} edit table] || || || || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.10871.P46a9a983737eb-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.10871.P46a9a983737eb-->
Line 207: Line 207:
Synonyms:zae-502::Tn10  
Synonyms:zae-502::Tn10  
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10871.E46a9a9841bd7f&page=10871&pagename={{FULLPAGENAMEE}} edit table] || || ||
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10871.E46a9a9841bd7f&page=10871&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.10871.E46a9a9841bd7f-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.10871.E46a9a9841bd7f-->
Line 277: Line 277:
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10871.U46a9a984a4f06&page=10871&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10871.U46a9a984a4f06&page=10871&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.10871.U46a9a984a4f06-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.10871.U46a9a984a4f06-->
Line 298: Line 298:
!Name!!URL!!Comments
!Name!!URL!!Comments
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10871.N46a676bcbb601&page=10871&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.10871.N46a676bcbb601&page=10871&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.10871.N46a676bcbb601-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.10871.N46a676bcbb601-->

Revision as of 08:04, 30 April 2008

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


Standard name

hrpB

Mnemonic
Synonyms

ECK0147, b0148, JW0144, yadO[1]

edit table

See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

[back to top]


Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

3.49 minutes 

MG1655: 162105..164534
gbrowse_img.php?coord=161105..165534&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 162105..164534
gbrowse_img.php?coord=161105..165534&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

edit table

See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

[back to top]


Feature type Location Description
edit table

See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

[back to top]


Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔhrpB (Keio:JW0144)

deletion

deletion

PMID:16738554[2]

Shigen
CGSC8414[3]

edit table

See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Resources

[back to top]


Resource Resource Type Source Notes/Reference

JW0144

Plasmid clone

Shigen

PMID:16769691[4]

Status:Clone OK

Primer 1:GCCTCGTCGTTGCCCGTTGCTGC

Primer 2:CCCGAATACTTTTTCGTCCGTCG

zad-220::Tn10

Linked marker

CAG12025 = CGSC7326[3]

est. P1 cotransduction: 62% [5]

yafC502::Tn10

Linked marker

CAG18436 = CGSC7328[3]

est. P1 cotransduction: 2% [5]

Synonyms:zae-502::Tn10

edit table

See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

[back to top]


Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12329

EchoBASE (EcoliWiki Page)

EchoBASE:EB2233

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0148

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C0181

EcoGene (EcoliWiki Page)

EcoGene:EG12329

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:HRPB

CGSC (EcoliWiki Page)

CGSC:36926

edit table

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  5. ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).


Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=hrpB:Gene&oldid=390084"