cyoC:Gene Product(s): Difference between revisions

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|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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</noinclude>[[Category:GO:0016021_!_integral to membrane]][[Category:GO:0009060_!_aerobic respiration]][[Category:GO:0009054_!_electron acceptor activity]][[Category:GO:0015453_!_oxidoreduction-driven active transmembrane transporter activity]]
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==Nomenclature==
==Nomenclature==
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** [http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=1.10.3.- 1.10.3.-]<ref name='LIB:Riley_2006'/>
** [http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=1.10.3.- 1.10.3.-]<ref name='LIB:Riley_2006'/>
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<big>'''Gene Ontology'''</big>
<big>'''Gene Ontology'''</big>
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<span id="Interactions"></span><big>'''Interactions'''</big>
<span id="Interactions"></span><big>'''Interactions'''</big>
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could be indirect   
could be indirect   
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==Localization==
==Localization==
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<span id="Sequence"></span><big>'''Physical Properties'''</big>
<span id="Sequence"></span><big>'''Physical Properties'''</big>
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41940 - 42315 (calc based on 6 Y, 6 W, and 3 C residues)  
41940 - 42315 (calc based on 6 Y, 6 W, and 3 C residues)  
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<big>'''Domains/Motifs/Modification Sites'''</big>
<big>'''Domains/Motifs/Modification Sites'''</big>
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<span id="Structure"></span><big>'''Structure'''</big>
<span id="Structure"></span><big>'''Structure'''</big>
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==References==
==References==
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__NOTOC__
__NOTOC__
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===Categories===
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[[Category:GO:0016021_!_integral to membrane]][[Category:GO:0009060_!_aerobic respiration]][[Category:GO:0009054_!_electron acceptor activity]][[Category:GO:0015453_!_oxidoreduction-driven active transmembrane transporter activity]][[Category:Complex:cytochrome <i>bo</i> terminal oxidase]][[Category:Products with structures in PDB]]

Revision as of 08:02, 2 August 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

CyoC product

Synonyms

cytochrome o ubiquinol oxidase subunit III product[1], B0430 product[2][1], CyoC product[2][1]

Product description

cytochrome bo terminal oxidase subunit III[2][3];

Component of ; [[:Category:Complex:cytochrome bo terminal oxidase|cytochrome bo terminal oxidase]][2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016021

integral to membrane

C

Seeded from Riley et al 2006 [1].

required fields missing

GO:0009060

aerobic respiration

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0009054

electron acceptor activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0015453

oxidoreduction-driven active transmembrane transporter activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

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See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

Partner Type Partner Notes

Protein

Subunits of [[:Category:Complex:cytochrome bo terminal oxidase|cytochrome bo terminal oxidase]]

could be indirect

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Notes

Localization

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MATDTLTHAT AHAHEHGHHD AGGTKIFGFW IYLMSDCILF SILFATYAVL VNGTAGGPTG
KDIFELPFVL VETFLLLFSS ITYGMAAIAM YKNNKSQVIS WLALTWLFGA GFIGMEIYEF
HHLIVNGMGP DRSGFLSAFF ALVGTHGLHV TSGLIWMAVL MVQIARRGLT STNRTRIMCL
SLFWHFLDVV WICVFTVVYL MGAM
Mol. Wt

22.62 kDa (calc) [2]

pI

7.03[2]

Extinction coefficient

41940 - 42315 (calc based on 6 Y, 6 W, and 3 C residues)

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Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structure Type Organism Accession Residues covered Notes

X-RAY DIFFRACTION

Escherichia coli

1FFT The structure of ubiquinol oxidase from Escherichia coli

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:CYOC-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0ABJ3

PFAM (EcoliWiki Page)

PFAM:PF00510

RefSeq (EcoliWiki Page)

RefSeq:NP_414964

ModBase (EcoliWiki Page)

ModBase:P0ABJ3

PDB (EcoliWiki Page)

PDB:1FFT

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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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[[Category:Complex:cytochrome bo terminal oxidase]]

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