dnaA:Gene Product(s): Difference between revisions

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{{Tab|Quickview|dnaA}}{{Tab|Gene|dnaA}}{{Tab On|Gene Product(s)|dnaA}}{{Tab|Expression|dnaA}}{{Tab|Evolution|dnaA}}{{Tab|On One Page|dnaA}}{{TabsBottom}}
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|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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</noinclude>[[Category:GO:0006261_!_DNA-dependent DNA replication]][[Category:GO:0005737_!_cytoplasm]][[Category:GO:0006350_!_transcription]][[Category:GO:0016564_!_transcription repressor activity]][[Category:GO:0016563_!_transcription activator activity]]
==Nomenclature==
==Nomenclature==
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!{{table heading style}} |Synonyms
!{{table heading style}} |Synonyms
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chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B3702<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DNA biosynthesis; DnaA-ATP initiates chromosome replication; can be transcription regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator product<ref name='LIB:Riley_2006'/>, B3702 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DnaA product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DNA biosynthesis; DnaA-ATP initiates chromosome replication; can be transcription regulator product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
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!{{table heading style}} |Product description
!{{table heading style}} |Product description
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DnaA transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/>; DnaA transcriptional dual regulator<ref name='LIB:EcoCyc11.1'/>
DnaA transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


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==Function==
==Function==
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===Gene Ontology===
<big>'''Gene Ontology'''</big>
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!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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GO:0016564  
GO:0016564  
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transcriptional repressor activity  
transcription repressor activity  
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GO:0016563  
GO:0016563  
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transcriptional activator activity  
transcription activator activity  
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===Interactions===
 
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<span id="Interactions"></span><big>'''Interactions'''</big>
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===Notes===
===Notes===


==Localization==
==Localization==
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!Compartment!!Description!!Evidence!!Notes
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===Notes===
===Notes===


==Structure and Physical Properties==
==Structure and Physical Properties==
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===Physical Properties===
<span id="Sequence"></span><big>'''Physical Properties'''</big>
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43890 - 44265 (calc based on 11 Y, 5 W, and 3 C residues)  
43890 - 44265 (calc based on 11 Y, 5 W, and 3 C residues)  
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===Domains/Motifs/Modification Sites===
 
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<big>'''Domains/Motifs/Modification Sites'''</big>
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===Structure===


<span id="Structure"></span><big>'''Structure'''</big>
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!Structure Type!!Organism!!Accession!!Residues covered!!Notes
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==Gene Product Resources==
==Gene Product Resources==
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===Notes===
===Notes===


==Accessions in Other Databases==
==Accessions in Other Databases==
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==Links==
==Links==
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==References==
==References==
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<references/>
<references/>
__NOTOC__
__NOTOC__
[[Category:GO:0006261]][[Category:GO:0005737]][[Category:GO:0006350]][[Category:GO:0016564]][[Category:GO:0016563]]</noinclude>
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Revision as of 19:34, 28 July 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

DnaA product

Synonyms

chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator product[1], B3702 product[2][1], DnaA product[2][1], DNA biosynthesis; DnaA-ATP initiates chromosome replication; can be transcription regulator product[2][1]

Product description

DnaA transcriptional dual regulator[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status

GO:0006261

DNA-dependent DNA replication

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0006350

transcription

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016564

transcription repressor activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016563

transcription activator activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

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See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

Partner Type Partner Notes
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Notes

Localization

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MSLSLWQQCL ARLQDELPAT EFSMWIRPLQ AELSDNTLAL YAPNRFVLDW VRDKYLNNIN
GLLTSFCGAD APQLRFEVGT KPVTQTPQAA VTSNVAAPAQ VAQTQPQRAA PSTRSGWDNV
PAPAEPTYRS NVNVKHTFDN FVEGKSNQLA RAAARQVADN PGGAYNPLFL YGGTGLGKTH
LLHAVGNGIM ARKPNAKVVY MHSERFVQDM VKALQNNAIE EFKRYYRSVD ALLIDDIQFF
ANKERSQEEF FHTFNALLEG NQQIILTSDR YPKEINGVED RLKSRFGWGL TVAIEPPELE
TRVAILMKKA DENDIRLPGE VAFFIAKRLR SNVRELEGAL NRVIANANFT GRAITIDFVR
EALRDLLALQ EKLVTIDNIQ KTVAEYYKIK VADLLSKRRS RSVARPRQMA MALAKELTNH
SLPEIGDAFG GRDHTTVLHA CRKIEQLREE SHDIKEDFSN LIRTLSS
Mol. Wt

52.55 kDa (calc) [2]

pI

8.67[2]

Extinction coefficient

43890 - 44265 (calc based on 11 Y, 5 W, and 3 C residues)

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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structure Type Organism Accession Residues covered Notes
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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:PD03831

SwissModel (EcoliWiki Page)

SwissModel:P03004

UniProt (EcoliWiki Page)

UniProt:P03004

RefSeq (EcoliWiki Page)

RefSeq:NP_418157

ModBase (EcoliWiki Page)

ModBase:P03004

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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


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