gltA:Gene Product(s): Difference between revisions

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{{Tab|Quickview|gltA}}{{Tab|Gene|gltA}}{{Tab On|Gene Product(s)|gltA}}{{Tab|Expression|gltA}}{{Tab|Evolution|gltA}}{{Tab|On One Page|gltA}}{{TabsBottom}}
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|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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</noinclude>[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0006099_!_tricarboxylic acid cycle]][[Category:GO:0009061_!_anaerobic respiration]]
==Nomenclature==
==Nomenclature==
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!{{table heading style}} |Synonyms
!{{table heading style}} |Synonyms
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|
citrate synthase<ref name='LIB:Riley_2006'/>, B0720<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, IcdB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GltA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
citrate synthase product<ref name='LIB:Riley_2006'/>, B0720 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, IcdB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GltA product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!{{table heading style}} |Product description
!{{table heading style}} |Product description
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citrate synthase monomer<ref name='LIB:EcoCyc10.6'/>; citrate synthase monomer<ref name='LIB:EcoCyc11.1'/>
citrate synthase monomer<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


|-
|-
!{{table heading style}} |EC number (for enzymes)
!{{table heading style}} |EC number (for enzymes)
|
|
*[http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=2.3.3.1 2.3.3.1]<ref name='LIB:Riley_2006'/>
** [http://www.brenda.uni-koeln.de/php/result_flat.php4?ecno=2.3.3.1 2.3.3.1]<ref name='LIB:Riley_2006'/>
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==Function==
==Function==
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===Gene Ontology===
<big>'''Gene Ontology'''</big>
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!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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===Interactions===
 
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<span id="Interactions"></span><big>'''Interactions'''</big>
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===Notes===
===Notes===


==Localization==
==Localization==
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!Compartment!!Description!!Evidence!!Notes
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===Notes===
===Notes===


==Structure and Physical Properties==
==Structure and Physical Properties==
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===Physical Properties===
<span id="Sequence"></span><big>'''Physical Properties'''</big>
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40340 - 41215 (calc based on 16 Y, 3 W, and 7 C residues)  
40340 - 41215 (calc based on 16 Y, 3 W, and 7 C residues)  
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===Domains/Motifs/Modification Sites===
 
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<big>'''Domains/Motifs/Modification Sites'''</big>
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!Type!!Residues!!Description!!Notes
!Type!!Residues!!Description!!Notes
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===Structure===
 
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<span id="Structure"></span><big>'''Structure'''</big>
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!Structure Type!!Organism!!Accession!!Residues covered!!Notes
!Structure Type!!Organism!!Accession!!Residues covered!!Notes
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==Gene Product Resources==
==Gene Product Resources==
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===Notes===
===Notes===


==Accessions in Other Databases==
==Accessions in Other Databases==
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==Links==
==Links==
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==References==
==References==
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__NOTOC__
__NOTOC__
[[Category:GO:0005737]][[Category:GO:0006099]][[Category:GO:0009061]]</noinclude>
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Revision as of 08:26, 28 July 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

GltA product

Synonyms

citrate synthase product[1], B0720 product[2][1], IcdB product[2][1], GltA product[2][1]

Product description

citrate synthase monomer[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

required fields missing

GO:0006099

tricarboxylic acid cycle

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0009061

anaerobic respiration

P

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions

Partner Type Partner Notes
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Notes

Localization

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MADTKAKLTL NGDTAVELDV LKGTLGQDVI DIRTLGSKGV FTFDPGFTST ASCESKITFI
DGDEGILLHR GFPIDQLATD SNYLEVCYIL LNGEKPTQEQ YDEFKTTVTR HTMIHEQITR
LFHAFRRDSH PMAVMCGITG ALAAFYHDSL DVNNPRHREI AAFRLLSKMP TMAAMCYKYS
IGQPFVYPRN DLSYAGNFLN MMFSTPCEPY EVNPILERAM DRILILHADH EQNASTSTVR
TAGSSGANPF ACIAAGIASL WGPAHGGANE AALKMLEEIS SVKHIPEFVR RAKDKNDSFR
LMGFGHRVYK NYDPRATVMR ETCHEVLKEL GTKDDLLEVA MELENIALND PYFIEKKLYP
NVDFYSGIIL KAMGIPSSMF TVIFAMARTV GWIAHWSEMH SDGMKIARPR QLYTGYEKRD
FKSDIKR
Mol. Wt

48.01 kDa (calc) [2]

pI

6.62[2]

Extinction coefficient

40340 - 41215 (calc based on 16 Y, 3 W, and 7 C residues)

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Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structure Type Organism Accession Residues covered Notes

X-RAY DIFFRACTION

Escherichia coli

1OWC Three Dimensional Structure Analysis Of The R109L Variant of the Type II Citrate Synthase From E. Coli

X-RAY DIFFRACTION

Escherichia coli

1OWB Three Dimensional Structure Analysis Of The Variant R109L NADH Complex of Type II Citrate Synthase From E. Coli

X-RAY DIFFRACTION

Escherichia coli

1NXG The F383A variant of type II Citrate Synthase complexed with NADH

X-RAY DIFFRACTION

Escherichia coli

1NXE A Novel NADH Allosteric Regulator Site is Found on the Surface of the Hexameric Type II Phe383Ala Variant of Citrate Synthase

X-RAY DIFFRACTION

Escherichia coli

1K3P Three Dimensional Structure Analysis of the Type II Citrate Synthase from E.coli

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:CITSYN-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0ABH7

PFAM (EcoliWiki Page)

PFAM:PF00285

RefSeq (EcoliWiki Page)

RefSeq:NP_415248

ModBase (EcoliWiki Page)

ModBase:P0ABH7

PDB (EcoliWiki Page)

PDB:1K3P

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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


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