yigA:Gene: Difference between revisions
imported>Wikientrybot Bulk deleting accessions. |
imported>Wikientrybot Refreshing information from GenBank record NC_000913 |
||
| Line 46: | Line 46: | ||
!align=left {{table_heading_style}} |Synonyms | !align=left {{table_heading_style}} |Synonyms | ||
|| | || | ||
''ECK3805, b3810, JW3783''<ref name='LIB:Riley_2006'/> | ''ECK3805, b3810, JW3783''<ref name='LIB:Riley_2006'/>, JW3783'' | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
| Line 326: | Line 326: | ||
|- {{table_heading_style}} | |- {{table_heading_style}} | ||
!|Database!!Accession!!Notes | !|Database!!Accession!!Notes | ||
|- | |||
| | |||
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]]) | |||
| | |||
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11201 ECOCYC:EG11201] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]]) | |||
| | |||
[http://ecogene.org/geneinfo.php?eg_id=EG11201 EcoGene:EG11201] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/gene?term=948359 GeneID:948359] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 21:59, 24 September 2011
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
yigA |
|---|---|
| Mnemonic |
Systematic nomenclature |
| Synonyms |
ECK3805, b3810, JW3783[1], JW3783 |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
86.08 minutes |
MG1655: 3993606..3994313 |
||
|
NC_012967: 3957420..3958127 |
||||
|
W3110 |
|
W3110: 3641098..3640391 |
||
| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
Strain DH10B |
L156STOP |
Nonsense mutation |
This is a SNP in E. coli K-12 Strain DH10B | ||||
|
ΔyigA (Keio:JW3783) |
deletion |
deletion |
|||||
|
ΔyigA756::kan |
| ||||||
| edit table |
Notes
Genetic Interactions
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW3783 |
Plasmid clone |
Status:Clone OK Primer 1:GCCAAGCAACCAGGGGAAGAACT Primer 2:CCTACGCGTTCAATCCAACGCTC | |
|
Kohara Phage |
|||
|
Linked marker |
est. P1 cotransduction: 18% [7] | ||
|
metEo-3079::Tn10 |
Linked marker |
est. P1 cotransduction: 59% [7] | |
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
<protect>
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Durfee, T et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190 2597-606 PubMed
- ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
- ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).