arnC:Gene: Difference between revisions

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!align=left {{table_heading_style}} |Synonyms
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''yfbF, ECK2247, b2254, JW2248, pmrF, ORF2''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''yfbF, ECK2247, b2254, JW2248, pmrF, ORF2''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, ORF2''


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7167 ECOCYC:G7167]
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Escherichia coli str. K-12 substr. MG1655
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
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[http://ecogene.org/geneinfo.php?eg_id=EG14090 EcoGene:EG14090]
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Escherichia coli str. K-12 substr. MG1655
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[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/gene?term=945275 GeneID:945275]
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Escherichia coli str. K-12 substr. MG1655


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Revision as of 14:24, 24 September 2011

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

arnC

Mnemonic

ara4N (4-amino-4-deoxy-L-arabinose)

Synonyms

yfbF, ECK2247, b2254, JW2248, pmrF, ORF2[1][2], ORF2

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

50.98 minutes 

MG1655: 2365093..2366061
<gbrowseImage> name=NC_000913:2365093..2366061 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2313584..2314552
<gbrowseImage> name=NC_012967:2313584..2314552 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2250898..2251866
<gbrowseImage> name=NC_012759:2250898..2251866 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2371741..2372709
<gbrowseImage> name=AC_000091:2371741..2372709 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2456081..2457049
<gbrowseImage> name=NC_010473:2456081..2457049 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔyfbF::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938[3]

ΔarnC735::kan

PMID:16738554[4]

CGSC:106134


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[5]

Status:

Primer 1:

Primer 2:

4B4

Kohara Phage

Genobase

PMID:3038334[6]

5H12

Kohara Phage

Genobase

PMID:3038334[6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

ECOCYC:G7167

Escherichia coli str. K-12 substr. MG1655

EcoGene (EcoliWiki Page)

EcoGene:EG14090

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945275

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Ito, M et al. (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab. Eng. 7 318-27 PubMed
  4. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  5. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  6. ↑ 6.0 6.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed

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