modB:Gene: Difference between revisions

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est. P1 cotransduction: 37% <ref name='LIB:Nichols_linked_Tn'/> <br />  
est. P1 cotransduction: 37% <ref name='LIB:Nichols_linked_Tn'/> <br />  
Synonyms:zbi-29::Tn10  
Synonyms:zbi-29::Tn10  
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[[:Category:Kohara_Phage:10F3|10F3]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=180 Genobase]
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PMID:3038334


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Revision as of 20:22, 2 September 2011

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

modB

Mnemonic

Molybdenum

Synonyms

ECK0753, b0764, JW0747, chlJ, tslJ, modB'[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

17.14 minutes 

MG1655: 795085..795774
<gbrowseImage> name=NC_000913:795085..795774 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 776491..777180
<gbrowseImage> name=NC_012967:776491..777180 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 698053..698742
<gbrowseImage> name=NC_012759:698053..698742 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 796284..796973
<gbrowseImage> name=AC_000091:796284..796973 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 849013..849702
<gbrowseImage> name=NC_010473:849013..849702 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔmodB (Keio:JW0747)

deletion

deletion

PMID:16738554[3]

Shigen
CGSC8808[4]

modB::Tn5KAN-2 (FB20235)

Insertion at nt 517 in Minus orientation

PMID:15262929[5]

E. coli Genome Project:FB20235

does not contain pKD46

ΔmodB736::kan

PMID:16738554[3]

CGSC:101912


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0747

Plasmid clone

Shigen

PMID:16769691[6]

Status:Clone OK

Primer 1:GCCATACTGACCGATCCAGAATG

Primer 2:CCGCGCCCCGCCCGTTCACGGCT

nadA57::Tn10

Linked marker

CAG12147 = CGSC7351[4]

est. P1 cotransduction: 58% [7]

zbh-29::Tn10

Linked marker

CAG18493 = CGSC7353[4]

est. P1 cotransduction: 37% [7]
Synonyms:zbi-29::Tn10

10F3

Kohara Phage

Genobase

PMID:3038334[8]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10002

EchoBASE (EcoliWiki Page)

EchoBASE:EB0002

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0764

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C0841

EcoGene (EcoliWiki Page)

EcoGene:EG10002

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:MODB

CGSC (EcoliWiki Page)

CGSC:18478

ASAP (EcoliWikiPage)

ASAP:ABE-0002603


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. ↑ Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
  6. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  8. ↑ Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed

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