aroG:Gene: Difference between revisions

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est. P1 cotransduction: 22% <ref name='LIB:Nichols_linked_Tn'/> <br />  
est. P1 cotransduction: 22% <ref name='LIB:Nichols_linked_Tn'/> <br />  
Synonyms:zbi-29::Tn10  
Synonyms:zbi-29::Tn10  
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[[:Category:Kohara_Phage:4H1|4H1]]
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Kohara Phage
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[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=179 Genobase]
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PMID:3038334


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Revision as of 20:22, 2 September 2011

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

aroG

Mnemonic

Aromatic

Synonyms

ECK0743, b0754, JW0737[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

16.92 minutes 

MG1655: 784856..785908
<gbrowseImage> name=NC_000913:784856..785908 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 766262..767314
<gbrowseImage> name=NC_012967:766262..767314 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 687824..688876
<gbrowseImage> name=NC_012759:687824..688876 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 786055..787107
<gbrowseImage> name=AC_000091:786055..787107 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 837448..838500
<gbrowseImage> name=NC_010473:837448..838500 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

784856

Edman degradation

PMID:9298646[2]
PMID:9740056[3]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔaroG (Keio:JW0737)

deletion

deletion

PMID:16738554[4]

Shigen
CGSC8801[5]

aroG365

CGSC:11321

ΔaroG726::kan

PMID:16738554[4]

CGSC:100068


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0737

Plasmid clone

Shigen

PMID:16769691[6]

Status:Clone OK

Primer 1:GCCAATTATCAGAACGACGATTT

Primer 2:CCCCCGCGACGCGCTTTTACTGC

nadA57::Tn10

Linked marker

CAG12147 = CGSC7351[5]

est. P1 cotransduction: 84% [7]

zbh-29::Tn10

Linked marker

CAG18493 = CGSC7353[5]

est. P1 cotransduction: 22% [7]
Synonyms:zbi-29::Tn10

4H1

Kohara Phage

Genobase

PMID:3038334[8]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10079

EchoBASE (EcoliWiki Page)

EchoBASE:EB0077

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0754

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C0830

EcoGene (EcoliWiki Page)

EcoGene:EG10079

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:AROG

CGSC (EcoliWiki Page)

CGSC:1002

ASAP (EcoliWikiPage)

ASAP:ABE-0002560


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
  3. ↑ Tonella, L et al. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19 1960-71 PubMed
  4. ↑ 4.0 4.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  8. ↑ Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed

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