insH-11:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Updating UniProt accessions on gene product page in accessions table.
/Volumes/r3/t3/ul/phpwikibots/trunk/touch_all_tables.php
Line 79: Line 79:
{|  id="W46aa261f28376"  class=" tableEdit GO_table_product dataTable"   
{|  id="W46aa261f28376"  class=" tableEdit GO_table_product dataTable"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 144: Line 144:
****************************************************************************************** -->{{Product_physical_properties_help}}
****************************************************************************************** -->{{Product_physical_properties_help}}
{|  id="J46aa2626a53d9"  class=" tableEdit Product_phys_prop_table"   
{|  id="J46aa2626a53d9"  class=" tableEdit Product_phys_prop_table"   
|-
!align=left {{table heading style}} |Name
||


|-
|-
Line 158: Line 162:
!align=left {{table heading style}} |Length
!align=left {{table heading style}} |Length
||
||
326
 
|-
|-
!align=left {{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
||
||
37.777 kDa
 
|-
|-
!align=left {{table heading style}} |pI
!align=left {{table heading style}} |pI
||
||
9.9 (calculated)
 
|-
|-
!align=left {{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
||
||
43,430 - 43,555 (calc based on 7 Y, 6 W, and 1 C residues)
 


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Revision as of 22:57, 15 August 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

InsH-4

Synonyms

B1370[1], InsH-5[1], Trs5-5[1], Yi52_5[1]

Product description

IS5 transposase and trans-activator[1][2]

EC number (for enzymes)


edit table


Notes

Function

[back to top]


Gene Ontology

IS5 transposase and trans-activator

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
edit table


Interactions

IS5 transposase and trans-activator

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSHQLTFADS EFSTKRRQTR KEIFLSRMEQ ILPWQNMTAV IEPFYPKAGN GRRPYPLETM
LRIHCMQHWY NLSDGAMEDA LYEIASMRLF ARLSLDSALP DRTTIMNFRH LLEQHQLARQ
LFKTINRWLA EAGVMMTQGT LVDATIIEAP SSTKNKEQQR DPEMHQTKKG NQWHFGMKAH
IGVDAKSGLT HSLVTTAANE HDLNQLGNLL HGEEQFVSAD AGYQGAPQRE ELAEVDVDWL
IAERPGKVKT LKQNPRKNKT AINIEYMKAS IRARVEHPFR IIKRQFGFVK ARYKGLLKND
NQLAMLFTLA NLFRVDQMIR QWERSQ
Length
Mol. Wt
pI
Extinction coefficient


edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

136..313

PF01609 Transposase DDE domain

PMID:19920124[3]

Domain

51..126

PF05598 Transposase domain (DUF772)

PMID:19920124[3]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=insH-11 taxon=562,83333 </beststructure>

Models

View models at:

edit table

Structure figures

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7776-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0CE51

PFAM (EcoliWiki Page)

Pfam:P76071

RefSeq (EcoliWiki Page)

RefSeq:NP_417962

UniProt (EcoliWiki Page)

UniProt:P0CE51

RefSeq (EcoliWiki Page)

RefSeq:NP_415888


edit table


Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=insH-11:Gene_Product(s)&oldid=1289073"