arnC:Gene: Difference between revisions

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Revision as of 20:18, 26 July 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

arnC

Mnemonic

ara4N (4-amino-4-deoxy-L-arabinose)

Synonyms

yfbF, ECK2247, b2254, JW2248, pmrF, ORF2[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

50.98 minutes 

MG1655: 2365093..2366061
<gbrowseImage> name=NC_000913:2365093..2366061 source=ecoli preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2313584..2314552
<gbrowseImage> name=NC_012967:2313584..2314552 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2250898..2251866
<gbrowseImage> name=NC_012759:2250898..2251866 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2371741..2372709
<gbrowseImage> name=AC_000091:2371741..2372709 source=ecoli_W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2456081..2457049
<gbrowseImage> name=NC_010473:2456081..2457049 source=ecoli_DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔyfbF::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938[3]

ΔarnC735::kan

PMID:16738554[4]

CGSC:106134


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[5]

Status:

Primer 1:

Primer 2:

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7167

EchoBASE (EcoliWiki Page)

EchoBASE:EB3843

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2254

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C2796

EcoGene (EcoliWiki Page)

EcoGene:EG14090

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:Z3512

ASAP (EcoliWikiPage)

ASAP:ABE-0007458


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Ito, M et al. (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab. Eng. 7 318-27 PubMed
  4. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  5. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed

Categories

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