acrE:Gene: Difference between revisions
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MG1655: 3411886..3413043<br /> | MG1655: 3411886..3413043<br /><gbrowseImage> | ||
name=NC_000913:3411886..3413043 | |||
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*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10266 EcoCyc] | *[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10266 EcoCyc] | ||
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NC_012967: 3341755..3342912<br /> | NC_012967: 3341755..3342912<br /><gbrowseImage> | ||
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{{GBrowseLink|REL606|NC_012967|3341755|3342912|GBrowse (REL606)}} | {{GBrowseLink|REL606|NC_012967|3341755|3342912|GBrowse (REL606)}} | ||
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{{GBrowseLink|BW2952|012759|3299034|NC_3300191|GBrowse (BW2952)}} | {{GBrowseLink|BW2952|012759|3299034|NC_3300191|GBrowse (BW2952)}} | ||
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W3110: 3413719..3414876<br /> | W3110: 3413719..3414876<br /><gbrowseImage> | ||
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{{GBrowseLink|ecoli_W3110|AC_000091|3412719|3415876|GBrowse(W3110)}} | {{GBrowseLink|ecoli_W3110|AC_000091|3412719|3415876|GBrowse(W3110)}} | ||
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DH10B: 3509631..3510788<br /> | DH10B: 3509631..3510788<br /><gbrowseImage> | ||
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{{GBrowseLink|ecoli_DH10B|NC_010473|3507317|3513102|GBrowse(DH10B)}} | {{GBrowseLink|ecoli_DH10B|NC_010473|3507317|3513102|GBrowse(DH10B)}} | ||
Revision as of 20:12, 26 July 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
acrE |
|---|---|
| Mnemonic |
Acridine |
| Synonyms | |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
73.54 minutes |
MG1655: 3411886..3413043 |
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NC_012967: 3341755..3342912 |
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NC_012759: 3299034..3300191 |
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|
W3110 |
|
W3110: 3413719..3414876 |
||
|
DH10B: 3509631..3510788 |
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| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Protein Binding Site (SO:0000410) |
MG1655 |
-289bps from the translational start site |
CRP binding site | ||
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔacrE (Keio:JW3233) |
deletion |
deletion |
|||||
|
At position 611 in Minus orientation, contains plasmid pKD46. | |||||||
|
At position 611 in Minus orientation, does not contain plasmid pKD46. | |||||||
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW3233 |
Plasmid clone |
Status:Clone OK Primer 1:GCCACGAAACATGCCAGGTTTTT Primer 2:CCtTTCGATGCAGTATCTGCGGG | |
|
Linked marker |
est. P1 cotransduction: 11% [8] | ||
|
Linked marker |
est. P1 cotransduction: 91% [8] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Zheng, D et al. (2004) Identification of the CRP regulon using in vitro and in vivo transcriptional profiling. Nucleic Acids Res. 32 5874-93 PubMed
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 5.0 5.1 Glasner, JD et al. (2003) ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 147-51 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 7.0 7.1 CGSC: The Coli Genetics Stock Center
- ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).