setB:Gene Product(s): Difference between revisions

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GO:0007059
GO:0005886
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chromosome segregation
plasma membrane
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PMID:14617174
GOA:spkw<br />SP_KW:GO_REF:0000004
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IMP: Inferred from Mutant Phenotype
IEA: Inferred from Electronic Annotation
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SP_KW:KW-0997
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P
C
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Seeded from [[EcoCyc]] (v14.0)
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complete
|-  
|-  
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GO:0016020
GO:0005886
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membrane
plasma membrane
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PMID:14617174
GOA:spkw<br />SP_KW:GO_REF:0000004
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IDA: Inferred from Direct Assay
IEA: Inferred from Electronic Annotation
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SP_KW:KW-1003
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C
C
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Seeded from [[EcoCyc]] (v14.0)
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complete
|-  
|-  
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GO:0015767
GO:0015542
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lactose transport
sugar efflux transmembrane transporter activity
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PMID:10438463
GOA:interpro<br />GO_REF:0000002
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IDA: Inferred from Direct Assay
IEA: Inferred from Electronic Annotation
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InterPro:IPR004750
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P
F
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Seeded from [[EcoCyc]] (v14.0)
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complete
|-  
|-  
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|
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GO:0015542
GO:0016020
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sugar efflux transmembrane transporter activity
membrane
|
|
PMID:10438463
GOA:spkw<br />SP_KW:GO_REF:0000004
|
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IDA: Inferred from Direct Assay
IEA: Inferred from Electronic Annotation
|
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SP_KW:KW-0472
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F
C
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Seeded from [[EcoCyc]] (v14.0)
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complete
|-  
|-  
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|


|
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GO:0015758
GO:0007059
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|
glucose transport
chromosome segregation
|
|
PMID:10438463
PMID:14617174
|
|
IDA: Inferred from Direct Assay
IMP: Inferred from Mutant Phenotype
|
|


Line 177: Line 177:


|
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GO:0016020
GO:0016021
|
|
membrane
integral to membrane
|
|
PMID:10438463
GOA:interpro<br />GO_REF:0000002
|
|
IDA: Inferred from Direct Assay
IEA: Inferred from Electronic Annotation
|
|
 
InterPro:IPR004750
|
|
C
C
|
|
 
Seeded from [[EcoCyc]] (v14.0)
|
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complete
|-  
|-  
|
|


|
|
GO:0005886
GO:0016020
|
|
plasma membrane
membrane
|
|
GOA:spkw<br />SP_KW:GO_REF:0000004
PMID:14617174
|
|
IEA: Inferred from Electronic Annotation
IDA: Inferred from Direct Assay
|
|
SP_KW:KW-0997
 
|
|
C
C
|
|
Seeded from [[EcoCyc]] (v14.0)
 
|
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complete
|-  
|-  
|
|


|
|
GO:0005886
GO:0016021
|
|
plasma membrane
integral to membrane
|
|
GOA:spkw<br />SP_KW:GO_REF:0000004
GOA:spkw<br />SP_KW:GO_REF:0000004
Line 223: Line 223:
IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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SP_KW:KW-1003
SP_KW:KW-0812
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|
C
C
Line 234: Line 234:


|
|
GO:0015542
GO:0015767
|
|
sugar efflux transmembrane transporter activity
lactose transport
|
|
GOA:interpro<br />GO_REF:0000002
PMID:10438463
|
|
IEA: Inferred from Electronic Annotation
IDA: Inferred from Direct Assay
|
|
InterPro:IPR004750
 
|
|
F
P
|
|
Seeded from [[EcoCyc]] (v14.0)
 
|
|
complete
|-  
|-  
|
|


|
|
GO:0016020
GO:0015542
|
|
membrane
sugar efflux transmembrane transporter activity
|
|
GOA:spkw<br />SP_KW:GO_REF:0000004
PMID:10438463
|
|
IEA: Inferred from Electronic Annotation
IDA: Inferred from Direct Assay
|
|
SP_KW:KW-0472
 
|
|
C
F
|
|
Seeded from [[EcoCyc]] (v14.0)
 
|
|
complete
|-  
|-  
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|
Line 276: Line 276:
integral to membrane
integral to membrane
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GOA:interpro<br />GO_REF:0000002
GO_REF:0000023
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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InterPro:IPR004750
SP_SL:SL-9909
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C
C
Line 291: Line 291:


|
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GO:0016021
GO:0015758
|
|
integral to membrane
glucose transport
|
|
GOA:spkw<br />SP_KW:GO_REF:0000004
PMID:10438463
|
|
IEA: Inferred from Electronic Annotation
IDA: Inferred from Direct Assay
|
|
SP_KW:KW-0812
 
|
|
C
P
|
|
Seeded from [[EcoCyc]] (v14.0)
 
|
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complete
|-  
|-  
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|


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GO:0016021
GO:0055085
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integral to membrane
transmembrane transport
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GO_REF:0000023
GOA:interpro<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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SP_SL:SL-9909
InterPro:IPR011701
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C
P
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Seeded from [[EcoCyc]] (v14.0)
Seeded from [[EcoCyc]] (v14.0)
Line 329: Line 329:


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GO:0055085
GO:0016020
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transmembrane transport
membrane
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GOA:interpro<br />GO_REF:0000002
PMID:10438463
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IEA: Inferred from Electronic Annotation
IDA: Inferred from Direct Assay
|
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InterPro:IPR011701
 
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P
C
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Seeded from [[EcoCyc]] (v14.0)
 
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complete


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Revision as of 22:17, 17 June 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

SetB

Synonyms

lactose/glucose efflux system[1], B2170[2][1], YeiO[2][1], SetB[2][1]

Product description

SetB MFS transporter[2][3]

Glucose and lactose efflux transporter[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

GO:0015542

sugar efflux transmembrane transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004750

F

Seeded from EcoCyc (v14.0)

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

GO:0007059

chromosome segregation

PMID:14617174[5]

IMP: Inferred from Mutant Phenotype

P

complete

GO:0016021

integral to membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004750

C

Seeded from EcoCyc (v14.0)

GO:0016020

membrane

PMID:14617174[5]

IDA: Inferred from Direct Assay

C

complete

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

GO:0015767

lactose transport

PMID:10438463[6]

IDA: Inferred from Direct Assay

P

complete

GO:0015542

sugar efflux transmembrane transporter activity

PMID:10438463[6]

IDA: Inferred from Direct Assay

F

complete

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9909

C

Seeded from EcoCyc (v14.0)

GO:0015758

glucose transport

PMID:10438463[6]

IDA: Inferred from Direct Assay

P

complete

GO:0055085

transmembrane transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011701

P

Seeded from EcoCyc (v14.0)

GO:0016020

membrane

PMID:10438463[6]

IDA: Inferred from Direct Assay

C

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

MreB

PMID:14617174[5]


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

plasma membrane

C-terminus localized in the cytoplasm with 12 predicted transmembrane domains

Daley et al. (2005) [7]


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MHNSPAVSSA KSFDLTSTAF LIVAFLTGIA GALQTPTLSI FLTDEVHARP AMVGFFFTGS
AVIGILVSQF LAGRSDKRGD RKSLIVFCCL LGVLACTLFA WNRNYFVLLF VGVFLSSFGS
TANPQMFALA REHADKTGRE AVMFSSFLRA QVSLAWVIGP PLAYALAMGF SFTVMYLSAA
VAFIVCGVMV WLFLPSMRKE LPLATGTIEA PRRNRRDTLL LFVICTLMWG SNSLYIINMP
LFIINELHLP EKLAGVMMGT AAGLEIPTML IAGYFAKRLG KRFLMRVAAV GGVCFYAGML
MAHSPVILLG LQLLNAIFIG ILGGIGMLYF QDLMPGQAGS ATTLYTNTSR VGWIIAGSVA
GIVAEIWNYH AVFWFAMVMI IATLFCLLRI KDV
Length

393

Mol. Wt

42.747 kDa

pI

10.1 (calculated)

Extinction coefficient

51,910 - 52,785 (calc based on 9 Y, 7 W, and 7 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

tmhmm.php?gene=setB&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=setB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:B2170-MONOMER

UniProt (EcoliWiki Page)

UniProt:P33026

PFAM (EcoliWiki Page)

PFAM:PF07690

RefSeq (EcoliWiki Page)

RefSeq:NP_416675


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Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 Espeli, O et al. (2003) SetB: an integral membrane protein that affects chromosome segregation in Escherichia coli. Mol. Microbiol. 50 495-509 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 Liu, JY et al. (1999) Functional and biochemical characterization of Escherichia coli sugar efflux transporters. J. Biol. Chem. 274 22977-84 PubMed
  7. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed

Categories

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