argK:Gene: Difference between revisions

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!align=left |Standard name
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''argK''  
''argK''
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!align=left |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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Arginine
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!align=left |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''ECK2914, b2918, JW2885, ygfD''<ref name='LIB:Riley_2006'/>
''ECK2914, b2918, JW2885, ygfD''<ref name='LIB:Riley_2006'/>
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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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&Delta;argK (Keio:JW2885)
argKT154A
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deletion
 
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deletion
T154A
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(in strain: RC101)
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PMID:16738554
 
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[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
Strain variation; seeded from [http://www.uniprot.org/uniprot/P27254 UniProt:P27254]  
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argKT154A
&Delta;argK (Keio:JW2885)
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deletion
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T154A
deletion
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(in strain: RC101)
 
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PMID:16738554
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[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
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Strain variation; seeded from [http://www.uniprot.org/uniprot/P27254 UniProt:P27254]


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Revision as of 20:57, 25 February 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

argK

Mnemonic

Arginine

Synonyms

ECK2914, b2918, JW2885, ygfD[1]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

65.97 minutes 

MG1655: 3061009..3062004
gbrowse_img.php?coord=3061009..3062004&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 2948738..2949733
gbrowse_img.php?coord=2948738..2949733&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 3061643..3062638
gbrowse_img.php?coord=3061643..3062638&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 3154879..3155874
gbrowse_img.php?coord=3154879..3155874&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

argKS68R

S68R

(in strain: RC101)

Strain variation; seeded from UniProt:P27254

argKT154A

T154A

(in strain: RC101)

Strain variation; seeded from UniProt:P27254

ΔargK (Keio:JW2885)

deletion

deletion

PMID:16738554[2]

Shigen


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2885

Plasmid clone

Shigen

PMID:16769691[3]

Status:Clone OK

Primer 1:GCCATTAATGAAGCCACGCTGGC

Primer 2:CCATCAAAATATTGCGTCTGGAT

recD1901::Tn10

Linked marker

CAG12135 = CGSC7429[4]

est. P1 cotransduction: % [5]

speA210::Tn10

Linked marker

CAG12168 = CGSC7431[4]

est. P1 cotransduction: 40% [5]
Synonyms:zgd-210::Tn10, zgf-210::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11445

EchoBASE (EcoliWiki Page)

EchoBASE:EB1415

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2918

EcoGene (EcoliWiki Page)

EcoGene:EG11445

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YGFD

ASAP (EcoliWikiPage)

ASAP:ABE-0009579


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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  4. ↑ 4.0 4.1 CGSC: The Coli Genetics Stock Center
  5. ↑ 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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