tdcB:Gene Product(s): Difference between revisions

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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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TdcB  
TdcB  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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catabolic threonine dehydratase, PLP-dependent<ref name='LIB:Riley_2006'/>, B3117<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tdc<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TdcB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
catabolic threonine dehydratase, PLP-dependent<ref name='LIB:Riley_2006'/>, B3117<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tdc<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TdcB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Product description
!align=left {{table heading style}} |Product description
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TdcB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
TdcB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Threonine dehydratase<ref name='LIB:EcoGene'/>
Threonine dehydratase<ref name='LIB:EcoGene'/>
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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.1.19 4.3.1.19]<ref name='LIB:Riley_2006'/>
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.1.19 4.3.1.19]<ref name='LIB:Riley_2006'/>
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****************************************************************************************** -->{{Product_GO_help}}
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{|  id="W46aad280afda8"  class=" tableEdit GO_table_product dataTable"   
{|  id="W46aad280afda8"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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*  
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{|  id="U46aad288d3ad6"  class=" tableEdit Product_interactions_table"   
{|  id="U46aad288d3ad6"  class=" tableEdit Product_interactions_table dataTable"   
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!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-  
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{|  id="F46a8666c40e1a"  class=" tableEdit Product_localization_table"   
{|  id="F46a8666c40e1a"  class=" tableEdit Product_localization_table"   
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|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=THREDEHYDCAT-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=THREDEHYDCAT-MONOMER at EcoCyc]  
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IQNRKTVSII SGGNIDLSRV SQITGFVDA</pre>  
IQNRKTVSII SGGNIDLSRV SQITGFVDA</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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329
329
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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35.232 kDa
35.232 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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6.0 (calculated)
6.0 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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11,920 - 12,670 (calc based on 8 Y,  W, and 6 C residues)
11,920 - 12,670 (calc based on 8 Y,  W, and 6 C residues)
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*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
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{|  id="R46aad28baf262"  class=" tableEdit Product_motif_table"   
{|  id="R46aad28baf262"  class=" tableEdit Product_motif_table dataTable"   
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|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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|-
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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{|  id="J46aad28c7baa8"  class=" tableEdit Product_resource_table"   
{|  id="J46aad28c7baa8"  class=" tableEdit Product_resource_table"   
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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{|  id="E46aad28cdbadb"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 21:26, 23 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

TdcB

Synonyms

catabolic threonine dehydratase, PLP-dependent[1], B3117[2][1], Tdc[2][1], TdcB[2][1]

Product description

TdcB[2][3];

Component of threonine dehydratase (catabolic)[2][3]

Threonine dehydratase[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0030170

pyridoxal phosphate binding

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000634
InterPro:IPR001926

F

Seeded from EcoCyc [5]

complete

GO:0004794

L-threonine ammonia-lyase activity

GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:4.3.1.19

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

required fields missing

GO:0003824

catalytic activity

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001926
SP_KW:KW-0021

F

Seeded from EcoCyc [5]

complete

GO:0003941

L-serine ammonia-lyase activity

PMID:4889010[7]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc [5]

complete

GO:0006520

amino acid metabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000634

P

Seeded from EcoCyc [5]

complete

GO:0006565

L-serine catabolic process

PMID:4889010[7]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc [5]

complete

GO:0008152

metabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001926

P

Seeded from EcoCyc [5]

complete

GO:0016829

lyase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0456

F

Seeded from EcoCyc [5]

complete

GO:0019518

threonine catabolic process to pyruvate

PMID:4889010[7]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc [5]

complete

GO:0009063

amino acid catabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0005737

cytoplasm

PMID:3540965[8]

IC: Inferred by Curator

C

complete

GO:0004793

threonine aldolase activity

PMID:3540965[8]

IDA: Inferred from Direct Assay

F

complete

GO:0006567

threonine catabolic process

PMID:6751404[9]

IDA: Inferred from Direct Assay

P

complete

GO:0016597

amino acid binding

PMID:3540965[8]

IDA: Inferred from Direct Assay

F

complete

GO:0030170

pyridoxal phosphate binding

PMID:6751404[9]

IDA: Inferred from Direct Assay

F

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of threonine dehydratase (catabolic)

could be indirect

Protein

yijP

PMID:16606699[10]

Experiment(s):EBI-1144834

Protein

yqjG

PMID:16606699[10]

Experiment(s):EBI-1144834
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MHITYDLPVA IDDIIEAKQR LAGRIYKTGM PRSNYFSERC KGEIFLKFEN MQRTGSFKIR
GAFNKLSSLT DAEKRKGVVA CSAGNHAQGV SLSCAMLGID GKVVMPKGAP KSKVAATCDY
SAEVVLHGDN FNDTIAKVSE IVEMEGRIFI PPYDDPKVIA GQGTIGLEIM EDLYDVDNVI
VPIGGGGLIA GIAVAIKSIN PTIRVIGVQS ENVHGMAASF HSGEITTHRT TGTLADGCDV
SRPGNLTYEI VRELVDDIVL VSEDEIRNSM IALIQRNKVV TEGAGALACA ALLSGKLDQY
IQNRKTVSII SGGNIDLSRV SQITGFVDA
Length

329

Mol. Wt

35.232 kDa

pI

6.0 (calculated)

Extinction coefficient

11,920 - 12,670 (calc based on 8 Y, W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=tdcB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:THREDEHYDCAT-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0AGF6

PFAM (EcoliWiki Page)

PFAM:PF00291

RefSeq (EcoliWiki Page)

RefSeq:NP_417587


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 7.2 Shizuta, Y et al. (1969) Studies on the interaction between regulatory enzymes and effectors. 3. Crystallization and characterization of adenosine 5'-monophosphate-dependent threonine deaminase from Escherichia coli. J Biol Chem 244 1883-9 PubMed
  8. ↑ 8.0 8.1 8.2 Datta, P et al. (1987) Covalent structure of biodegradative threonine dehydratase of Escherichia coli: homology with other dehydratases. Proc. Natl. Acad. Sci. U.S.A. 84 393-7 PubMed
  9. ↑ 9.0 9.1 Kim, SS & Datta, P (1982) Chemical characterization of biodegradative threonine dehydratases from two enteric bacteria. Biochim. Biophys. Acta 706 27-35 PubMed
  10. ↑ 10.0 10.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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