insH-11:Gene Product(s): Difference between revisions

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|-
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!align=left |Standard name
!align=left {{table heading style}} |Standard name
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InsH-4  
InsH-4  
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!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
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B1370<ref name='LIB:EcoCyc10.6'/>, InsH-5<ref name='LIB:EcoCyc10.6'/>, Trs5-5<ref name='LIB:EcoCyc10.6'/>, Yi52_5<ref name='LIB:EcoCyc10.6'/>  
B1370<ref name='LIB:EcoCyc10.6'/>, InsH-5<ref name='LIB:EcoCyc10.6'/>, Trs5-5<ref name='LIB:EcoCyc10.6'/>, Yi52_5<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Product description
!align=left {{table heading style}} |Product description
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IS5 transposase and trans-activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
IS5 transposase and trans-activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


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!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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****************************************************************************************** -->{{Product_GO_help}}
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{|  id="W46aa261f28376"  class=" tableEdit GO_table_product dataTable"   
{|  id="W46aa261f28376"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
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{|  id="H46aa2624e7c47"  class=" tableEdit Product_interactions_table"   
{|  id="H46aa2624e7c47"  class=" tableEdit Product_interactions_table dataTable"   
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|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence


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{|  id="M46a7b75d6c64b"  class=" tableEdit Product_localization_table"   
{|  id="M46a7b75d6c64b"  class=" tableEdit Product_localization_table"   
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|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


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|-
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!align=left |Sequence
!align=left {{table heading style}} |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object= at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object= at EcoCyc]  
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NQLAMLFTLA NLFRVDQMIR QWERSQ</pre>  
NQLAMLFTLA NLFRVDQMIR QWERSQ</pre>  
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!align=left |Length
!align=left {{table heading style}} |Length
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326
326
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!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
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37.777 kDa
37.777 kDa
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!align=left |pI
!align=left {{table heading style}} |pI
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9.9 (calculated)
9.9 (calculated)
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!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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43,430 - 43,555 (calc based on 7 Y, 6 W, and 1 C residues)
43,430 - 43,555 (calc based on 7 Y, 6 W, and 1 C residues)
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*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
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{|  id="V46aa262709b0d"  class=" tableEdit Product_motif_table"   
{|  id="V46aa262709b0d"  class=" tableEdit Product_motif_table dataTable"   
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|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.20126.V46aa262709b0d&page=20126&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
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|-
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!align=left |Structures
!align=left {{table heading style}} |Structures
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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left |Models
!align=left {{table heading style}} |Models
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View models at:
View models at:
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{|  id="F46aa26279d710"  class=" tableEdit Product_resource_table"   
{|  id="F46aa26279d710"  class=" tableEdit Product_resource_table"   
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!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


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****************************************************************************************** -->{{Gene_accessions_help}}
{|  id="L46aa2627e6c99"  class=" tableEdit Gene_accessions_table"   
{|  id="L46aa2627e6c99"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 20:13, 23 February 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

InsH-4

Synonyms

B1370[1], InsH-5[1], Trs5-5[1], Yi52_5[1]

Product description

IS5 transposase and trans-activator[1][2]

EC number (for enzymes)


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Notes

Function

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Gene Ontology

IS5 transposase and trans-activator

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0032196

transposition

GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0814
SP_KW:KW-0815

P

Seeded from EcoCyc [3]

complete

GO:0016563

transcription activator activity

PMID:1311089[4]

IMP: Inferred from Mutant Phenotype

F

Seeded from EcoCyc [3]

complete

GO:0003677

DNA binding

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR002559
SP_KW:KW-0238

F

Seeded from EcoCyc [3]

complete

GO:0004803

transposase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002559

F

Seeded from EcoCyc [3]

complete

GO:0006310

DNA recombination

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0233

P

Seeded from EcoCyc [3]

complete

GO:0006313

transposition, DNA-mediated

GO_REF:0000002
GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR002559
SP_KW:KW-0814
SP_KW:KW-0815

P

Seeded from EcoCyc 12.5 [5]

complete

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Interactions

IS5 transposase and trans-activator

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MSHQLTFADS EFSTKRRQTR KEIFLSRMEQ ILPWQNMTAV IEPFYPKAGN GRRPYPLETM
LRIHCMQHWY NLSDGAMEDA LYEIASMRLF ARLSLDSALP DRTTIMNFRH LLEQHQLARQ
LFKTINRWLA EAGVMMTQGT LVDATIIEAP SSTKNKEQQR DPEMHQTKKG NQWHFGMKAH
IGVDAKSGLT HSLVTTAANE HDLNQLGNLL HGEEQFVSAD AGYQGAPQRE ELAEVDVDWL
IAERPGKVKT LKQNPRKNKT AINIEYMKAS IRARVEHPFR IIKRQFGFVK ARYKGLLKND
NQLAMLFTLA NLFRVDQMIR QWERSQ
Length

326

Mol. Wt

37.777 kDa

pI

9.9 (calculated)

Extinction coefficient

43,430 - 43,555 (calc based on 7 Y, 6 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=insH-11 taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7769-MONOMER

UniProt (EcoliWiki Page)

UniProt:P03837

PFAM (EcoliWiki Page)

PFAM:PF01609

RefSeq (EcoliWiki Page)

RefSeq:NP_417962

UniProt (EcoliWiki Page)

UniProt:P76071

RefSeq (EcoliWiki Page)

RefSeq:NP_415888


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  4. ↑ Schnetz, K & Rak, B (1992) IS5: a mobile enhancer of transcription in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 89 1244-8 PubMed
  5. ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

Categories

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