tpr:Gene: Difference between revisions
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===Notes=== | ===Notes=== | ||
The Keio collection<ref name='PMID:16738554'/> lists a deletion of ''tpr''. The insertion in this strain is a duplication of the ''tpr'' region.<ref name='PMID:20029369'/> | |||
==Genetic Resources== | ==Genetic Resources== | ||
Revision as of 23:42, 11 February 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
tpr |
|---|---|
| Mnemonic | |
| Synonyms |
ECK1224, b1229, JW1219[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
27.72 minutes |
MG1655: 1286411..1286310 |
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|
W3110 |
|
W3110: 1288765..1288664 |
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|
DH10B: 1326640..1326551 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature type | Location | Description |
|---|---|---|
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
Δtpr (Keio:JW1219) |
deletion |
deletion |
|||||
|
Δtpr-740::kan |
| ||||||
| edit table |
Notes
The Keio collection[2] lists a deletion of tpr. The insertion in this strain is a duplication of the tpr region.[4]
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW1219 |
Plasmid clone |
Status:Clone OK Primer 1:GCCCGGGGAAGGATGAGAAGCTT Primer 2:CCGCGCTGCGCGCTTCGCCCTTC | |
|
Linked marker |
est. P1 cotransduction: 8% [6] | ||
|
Linked marker |
est. P1 cotransduction: 54% [6] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
- ↑ Yamamoto, N et al. (2009) Update on the Keio collection of Escherichia coli single-gene deletion mutants. Mol. Syst. Biol. 5 335 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).