clpB:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Update TableEdit tables.
touch the Product_motif_table table.
Line 38: Line 38:


|-
|-
!align=left |Standard name
!align=left {{table heading style}} |Standard name
||
||
ClpB  
ClpB  
|-
|-
!align=left |Synonyms
!align=left {{table heading style}} |Synonyms
||
||
protein disaggregation chaperone<ref name='LIB:Riley_2006'/>, B2592<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HtpM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ClpB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, F84.1<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, F68.5<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, E89<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
protein disaggregation chaperone<ref name='LIB:Riley_2006'/>, B2592<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HtpM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ClpB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, F84.1<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, F68.5<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, E89<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
|-
!align=left |Product description
!align=left {{table heading style}} |Product description
||
||
ClpB chaperone<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
ClpB chaperone<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
Line 52: Line 52:
ATP-dependent protease and chaperone; protein disaggregation chaperone; role in de novo protein folding under mild stress conditions<ref name='LIB:EcoGene'/>
ATP-dependent protease and chaperone; protein disaggregation chaperone; role in de novo protein folding under mild stress conditions<ref name='LIB:EcoGene'/>
|-
|-
!align=left |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
||
||


Line 76: Line 76:
****************************************************************************************** -->{{Product_GO_help}}
****************************************************************************************** -->{{Product_GO_help}}
{|  id="Y46aab1dc175df"  class=" tableEdit GO_table_product dataTable"   
{|  id="Y46aab1dc175df"  class=" tableEdit GO_table_product dataTable"   
|-
|- {{table_heading_style}}
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-  
|-  
Line 320: Line 320:
*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
****************************************************************************************** -->{{Product_interactions_help}}
{|  id="H46aab1e881549"  class=" tableEdit Product_interactions_table"   
{|  id="H46aab1e881549"  class=" tableEdit Product_interactions_table dataTable"   
|-
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-  
|-  
Line 727: Line 727:
****************************************************************************************** -->{{Product_localization_help}}
****************************************************************************************** -->{{Product_localization_help}}
{|  id="B46aab1e947882"  class=" tableEdit Product_localization_table"   
{|  id="B46aab1e947882"  class=" tableEdit Product_localization_table"   
|-
|- {{table heading style}}
!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes
|-  
|-  
Line 765: Line 765:


|-
|-
!align=left |Sequence
!align=left {{table heading style}} |Sequence
||
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG10157-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG10157-MONOMER at EcoCyc]  
Line 784: Line 784:
GKVIRLEVNE DRIVAVQ</pre>  
GKVIRLEVNE DRIVAVQ</pre>  
|-
|-
!align=left |Length
!align=left {{table heading style}} |Length
||
||
857
857
|-
|-
!align=left |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
||
||
95.587 kDa
95.587 kDa
|-
|-
!align=left |pI
!align=left {{table heading style}} |pI
||
||
5.3 (calculated)
5.3 (calculated)
|-
|-
!align=left |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
||
||
36,330 - 36,705 (calc based on 17 Y, 2 W, and 3 C residues)
36,330 - 36,705 (calc based on 17 Y, 2 W, and 3 C residues)
Line 815: Line 815:
*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
****************************************************************************************** -->{{Product_domains_motifs_help}}
{|  id="M46aab1eb54e7a"  class=" tableEdit Product_motif_table"   
{|  id="M46aab1eb54e7a"  class=" tableEdit Product_motif_table dataTable"   
|-
|- {{table heading style}}
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25480.M46aab1eb54e7a&page=25480&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25480.M46aab1eb54e7a&page=25480&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.25480.M46aab1eb54e7a--></td>
<!--box uid=421aa90e079fa326b6494f812ad13e79.25480.M46aab1eb54e7a--></td>
Line 843: Line 843:


|-
|-
!align=left |Structures
!align=left {{table heading style}} |Structures
||
||
<beststructure>
<beststructure>
Line 850: Line 850:
</beststructure>
</beststructure>
|-
|-
!align=left |Models
!align=left {{table heading style}} |Models
||
||
View models at:
View models at:
Line 899: Line 899:
****************************************************************************************** -->{{Product_resources_help}}
****************************************************************************************** -->{{Product_resources_help}}
{|  id="G46aab1ed31a17"  class=" tableEdit Product_resource_table"   
{|  id="G46aab1ed31a17"  class=" tableEdit Product_resource_table"   
|-
|- {{table_heading_style}}
!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


Line 921: Line 921:
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|  id="I46aab1ed9023f"  class=" tableEdit Gene_accessions_table"   
{|  id="I46aab1ed9023f"  class=" tableEdit Gene_accessions_table"   
|-
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
Line 971: Line 971:
****************************************************************************************** -->
****************************************************************************************** -->
{|  id="W46a849eca0546"  class=" tableEdit Links_table"   
{|  id="W46a849eca0546"  class=" tableEdit Links_table"   
|-
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


Revision as of 19:33, 23 February 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

ClpB

Synonyms

protein disaggregation chaperone[1], B2592[2][1], HtpM[2][1], ClpB[2][1], F84.1[2][1], F68.5[2][1], E89[2][1]

Product description

ClpB chaperone[2][3]

ATP-dependent protease and chaperone; protein disaggregation chaperone; role in de novo protein folding under mild stress conditions[4]

EC number (for enzymes)


edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0005524

ATP binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001270
InterPro:IPR003959
SP_KW:KW-0067

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0005515

protein binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004176

F

Seeded from EcoCyc [6]

complete

GO:0000166

nucleotide binding

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR003593
SP_KW:KW-0547

F

Seeded from EcoCyc [6]

complete

GO:0005737

cytoplasm

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc 12.5 [5]

complete

GO:0006950

response to stress

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0346

P

Seeded from EcoCyc [6]

complete

GO:0017111

nucleoside-triphosphatase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc [6]

complete

GO:0019538

protein metabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004176

P

Seeded from EcoCyc [6]

complete

GO:0005624

membrane fraction

PMID:16858726[7]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [6]

complete

GO:0006457

protein folding

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0005739

mitochondrion

PMID:16858726[7]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [6]

complete

GO:0005829

cytosol

PMID:16858726[7]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [6]

complete

GO:0009050

glycopeptide catabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsB

PMID:15690043[8]

Experiment(s):EBI-884811

Protein

tufA

PMID:15690043[8]

Experiment(s):EBI-884811

Protein

ydeP

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

ccmB

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

rnz

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

glcB

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

lasT

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

ptsN

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

rplC

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

rplM

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

rplU

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

rplV

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

rpmC

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

rpsG

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

rpsH

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

rpsJ

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

rpsN

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

sapC

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

thiG

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

yagW

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

ygaU

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

yhfT

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

gfcB

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

evgS

PMID:15690043[8]

Experiment(s):EBI-891673

Protein

putA

PMID:16606699[9]

Experiment(s):EBI-1143404

Protein

uidC

PMID:16606699[9]

Experiment(s):EBI-1143404

Protein

lacZ

PMID:16606699[9]

Experiment(s):EBI-1143404

Protein

ptsP

PMID:16606699[9]

Experiment(s):EBI-1143404

Protein

yjbH

PMID:16606699[9]

Experiment(s):EBI-1143404

Protein

alaS

PMID:16606699[9]

Experiment(s):EBI-1143404

Protein

ulaF

PMID:16606699[9]

Experiment(s):EBI-1143404

Protein

phoB

PMID:16606699[9]

Experiment(s):EBI-1143404

Protein

rplB

PMID:16606699[9]

Experiment(s):EBI-1143404

Protein

sdhA

PMID:16606699[9]

Experiment(s):EBI-1143404

Protein

nadE

PMID:16606699[9]

Experiment(s):EBI-1143404
edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

cytoplasm


edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MRLDRLTNKF QLALADAQSL ALGHDNQFIE PLHLMSALLN QEGGSVSPLL TSAGINAGQL
RTDINQALNR LPQVEGTGGD VQPSQDLVRV LNLCDKLAQK RGDNFISSEL FVLAALESRG
TLADILKAAG ATTANITQAI EQMRGGESVN DQGAEDQRQA LKKYTIDLTE RAEQGKLDPV
IGRDEEIRRT IQVLQRRTKN NPVLIGEPGV GKTAIVEGLA QRIINGEVPE GLKGRRVLAL
DMGALVAGAK YRGEFEERLK GVLNDLAKQE GNVILFIDEL HTMVGAGKAD GAMDAGNMLK
PALARGELHC VGATTLDEYR QYIEKDAALE RRFQKVFVAE PSVEDTIAIL RGLKERYELH
HHVQITDPAI VAAATLSHRY IADRQLPDKA IDLIDEAASS IRMQIDSKPE ELDRLDRRII
QLKLEQQALM KESDEASKKR LDMLNEELSD KERQYSELEE EWKAEKASLS GTQTIKAELE
QAKIAIEQAR RVGDLARMSE LQYGKIPELE KQLEAATQLE GKTMRLLRNK VTDAEIAEVL
ARWTGIPVSR MMESEREKLL RMEQELHHRV IGQNEAVDAV SNAIRRSRAG LADPNRPIGS
FLFLGPTGVG KTELCKALAN FMFDSDEAMV RIDMSEFMEK HSVSRLVGAP PGYVGYEEGG
YLTEAVRRRP YSVILLDEVE KAHPDVFNIL LQVLDDGRLT DGQGRTVDFR NTVVIMTSNL
GSDLIQERFG ELDYAHMKEL VLGVVSHNFR PEFINRIDEV VVFHPLGEQH IASIAQIQLK
RLYKRLEERG YEIHISDEAL KLLSENGYDP VYGARPLKRA IQQQIENPLA QQILSGELVP
GKVIRLEVNE DRIVAVQ
Length

857

Mol. Wt

95.587 kDa

pI

5.3 (calculated)

Extinction coefficient

36,330 - 36,705 (calc based on 17 Y, 2 W, and 3 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=clpB taxon=562,83333 </beststructure>

Models

View models at:

edit table

Structure figures

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10157-MONOMER

UniProt (EcoliWiki Page)

UniProt:P63284

PFAM (EcoliWiki Page)

PFAM:PF02861

RefSeq (EcoliWiki Page)

RefSeq:NP_417083


edit table


Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  7. ↑ 7.0 7.1 7.2 Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
  8. ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 8.11 8.12 8.13 8.14 8.15 8.16 8.17 8.18 8.19 8.20 8.21 8.22 8.23 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  9. ↑ 9.00 9.01 9.02 9.03 9.04 9.05 9.06 9.07 9.08 9.09 9.10 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=clpB:Gene_Product(s)&oldid=1048679"