pptA:Gene: Difference between revisions

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!align=left {{table_heading_style}} |Standard name
!align=left |Standard name
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''pptA''  
''pptA''  
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!align=left {{table_heading_style}} |Mnemonic
!align=left |Mnemonic
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!align=left {{table_heading_style}} |Synonyms
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''ydcE, ECK1455, b1461, JW1456''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ydcE, ECK1455, b1461, JW1456''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>


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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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*[http://biocyc.org/ECOLI/sequence?object=EG11761 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG11761 EcoCyc Sequence Dump]  
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[[REL606]]
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NC_012967: 1507202..1507429<br />{{GBrowseFigureByCoord|1507202|1507429|REL606|NC_012967}}
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NC_012967: 1507202..1507429<br />{{GBrowseFigureByCoord|1507202|1507429|REL606|NC_012967}}
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Revision as of 05:20, 9 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

pptA

Mnemonic
Synonyms

ydcE, ECK1455, b1461, JW1456[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

33 minutes 

MG1655: 1531076..1531309
gbrowse_img.php?coord=1531076..1531309&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 1507202..1507429
gbrowse_img.php?coord=1507202..1507429&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 1534766..1534999
gbrowse_img.php?coord=1534766..1534999&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 1621671..1621904
gbrowse_img.php?coord=1621671..1621904&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[3]

Status:

Primer 1:

Primer 2:

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11761

EchoBASE (EcoliWiki Page)

EchoBASE:EB1711

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1461

EcoGene (EcoliWiki Page)

EcoGene:EG11761

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:YDCE

ASAP (EcoliWikiPage)

ASAP:ABE-0004875


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed

Categories

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