pptA:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YdcE

Synonyms

4-oxalocrotonate tautomerase[1], PptA[2][1], YdcE[2][1], B1461[2][1] , ECK1455, JW1456, ydcE, b1461

Product description

probable 4-oxalocrotonate tautomerase (4-OT)[2][3];

Component of probable 4-oxalocrotonate tautomerase (4-OT)[3]

Phenylpyruvate tautomerase; other substrates are (p-hydroxyphenyl)pyruvate and 2-hydroxy-2,4-pentadienoate; homodimeric[4]

EC number (for enzymes)
edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00718

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017284

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006725

cellular aromatic compound metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004370

P

Seeded from EcoCyc (v14.0)

complete

GO:0016853

isomerase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004370

F

Seeded from EcoCyc (v14.0)

complete

GO:0016853

isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0413

F

Seeded from EcoCyc (v14.0)

complete

GO:0016862

intramolecular oxidoreductase activity, interconverting keto- and enol-groups

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00718

F

Seeded from EcoCyc (v14.0)

complete

GO:0016862

intramolecular oxidoreductase activity, interconverting keto- and enol-groups

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017284

F

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of probable 4-oxalocrotonate tautomerase (4-OT)

could be indirect

Protein

yhcA

PMID:16606699[5]

Experiment(s):EBI-1139876

Protein

glgB

PMID:16606699[5]

Experiment(s):EBI-1139876

Protein

pyrB

PMID:16606699[5]

Experiment(s):EBI-1139876

Protein

narZ

PMID:16606699[5]

Experiment(s):EBI-1139876

Protein

ydeP

PMID:16606699[5]

Experiment(s):EBI-1139876

Protein

yfaS

PMID:16606699[5]

Experiment(s):EBI-1139876

Protein

lacZ

PMID:16606699[5]

Experiment(s):EBI-1139876

Protein

yggF

PMID:16606699[5]

Experiment(s):EBI-1139876

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1139876

Protein

ybiB

PMID:16606699[5]

Experiment(s):EBI-1139876

Protein

yehQ

PMID:16606699[5]

Experiment(s):EBI-1139876

Protein

yqhH

PMID:16606699[5]

Experiment(s):EBI-1139876

Protein

yqgC

PMID:16606699[5]

Experiment(s):EBI-1139876

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1139876
edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MPHIDIKCFP RELDEQQKAA LAADITDVII RHLNSKDSSI SIALQQIQPE SWQAIWDAEI
APQMEALIKK PGYSMNA
Length

77

Mol. Wt

8.672 kDa

pI

4.8 (calculated)

Extinction coefficient

12,490 - 12,615 (calc based on 1 Y, 2 W, and 1 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P31992

Domain

2..55

PF01361 Tautomerase enzyme

PMID:19920124[6]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=pptA taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129420

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945731

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004875

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P31992

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11761

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11761

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945731

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001697

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1711

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=pptA:Gene_Product(s)&oldid=1493403"