zntA:Gene: Difference between revisions

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!align=left {{table_heading_style}} |Standard name
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''zntA''  
''zntA''  
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!align=left {{table_heading_style}} |Mnemonic
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!align=left {{table_heading_style}} |Synonyms
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''ECK3453, b3469, JW3434, yhhO, G7766''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK3453, b3469, JW3434, yhhO, G7766''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>


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!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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{{GBrowseFastaLink|ecoli|NC_000913|3604474|3606672|FASTA Dump}}
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*[http://biocyc.org/ECOLI/sequence?object=EG12215 EcoCyc Sequence Dump]  
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[[REL606]]
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NC_012967: 3537139..3539337<br />{{GBrowseFigureByCoord|3537139|3539337|REL606|NC_012967}}
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est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>  
est. P1 cotransduction: % <ref name='LIB:Nichols_linked_Tn'/>  


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Revision as of 03:05, 10 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

zntA

Mnemonic
Synonyms

ECK3453, b3469, JW3434, yhhO, G7766[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

77.69 minutes 

MG1655: 3604474..3606672
gbrowse_img.php?coord=3604474..3606672&genome=ecoli&name=MG1655&trackset=0&width=300&.png

REL606

NC_012967: 3537139..3539337
gbrowse_img.php?coord=3537139..3539337&genome=REL606&name=NC_012967&trackset=0&width=300&.png

W3110

 

W3110: 4033964..4031766
gbrowse_img.php?coord=4031766..4033964&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

DH10B

DH10B: 3702219..3704417
gbrowse_img.php?coord=3702219..3704417&genome=ecoli_DH10B&name=DH10B&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔzntA (Keio:JW3434)

deletion

deletion

PMID:16738554[3]

Shigen
CGSC10551[4]

zntA::Tn5KAN

PMID:12519969[5]

ASAP

At position 1911 in Minus orientation, contains plasmid pKD46.
ASAP strain name: FB21224

zntA1(CdS,ZnS)::kan

PMID:9405611[6]

CGSC:79312

ΔzntA724::kan

PMID:16738554[3]

CGSC:106104


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3434

Plasmid clone

Shigen

PMID:16769691[7]

Status:Clone OK

Primer 1:GCCTCGACTCCTGACAATCACGG

Primer 2:CCTCTCCTGCGCAACAATCTTAA

zhg-50::Tn10

Linked marker

CAG18450 = CGSC7450[4]

est. P1 cotransduction: 63% [8]
Synonyms:zhf-50::Tn10, zhf-5::Tn10

zic-4901::Tn10

Linked marker

CAG18492 = CGSC7457[4]

est. P1 cotransduction: % [8]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12215

EchoBASE (EcoliWiki Page)

EchoBASE:EB2129

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3469

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C4262

EcoGene (EcoliWiki Page)

EcoGene:EG12215

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:ZNTA

ASAP (EcoliWikiPage)

ASAP:ABE-0011332


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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. ↑ Glasner, JD et al. (2003) ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 147-51 PubMed
  6. ↑ Rensing, C et al. (1997) The zntA gene of Escherichia coli encodes a Zn(II)-translocating P-type ATPase. Proc. Natl. Acad. Sci. U.S.A. 94 14326-31 PubMed
  7. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  8. ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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